JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF35_chr3_44643732_44665791	1/1	a0001	527	228	94	60	31	16	25	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	a0002	527	92	2	14	60	0	16	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	a0003	527	2	0	2	0	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	a0004	527	1	0	0	1	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	a0005	527	1	1	0	0	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	a0006	527	1	1	0	0	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	a0007	527	1	0	0	0	0	1	copy fasta	ZNF35	chr3	44643732	44665791
ZNF362_chr1_33251492_33305719	1/1	a0001	420	342	89	60	137	10	44	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	a0002	420	2	2	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	a0003	420	1	0	0	1	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	a0004	420	1	1	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF365_chr10_62369369_62407450	1/0	a0001	407	197	73	38	64	4	17	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/1	a0002	407	145	8	37	68	10	21	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	a0003	407	4	3	1	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	a0004	407	2	2	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	a0005	407	2	0	0	2	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF366_chr5_72434903_72512410	1/1	a0001	744	318	67	63	141	12	33	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	a0002	744	22	20	2	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	a0003	744	9	1	0	7	0	1	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	a0004	744	7	1	3	2	1	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	a0005	744	4	4	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	a0006	637	2	0	2	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	a0007	744	2	2	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	a0008	744	1	0	0	0	1	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	a0009	744	1	1	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	a0010	287	1	1	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	a0011	744	1	1	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF367_chr9_96380941_96423370	1/1	a0001	350	317	81	53	130	10	41	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	a0002	350	3	3	0	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	a0003	350	1	0	1	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	a0004	350	1	0	0	0	0	1	copy fasta	ZNF367	chr9	96380941	96423370
ZNF37A_chr10_38089337_38129625	1/1	a0001	561	353	79	62	160	16	34	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	a0002	561	24	0	13	10	0	1	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	a0003	561	3	3	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	a0004	561	2	0	2	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	a0005	561	2	0	2	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	a0006	561	1	0	1	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	a0007	561	1	0	0	0	0	1	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF382_chr19_36600313_36639114	0/1	a0001	550	209	68	31	88	4	17	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	1/0	a0002	550	105	23	33	25	7	16	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	a0003	550	33	1	4	21	3	4	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	a0004	550	3	0	3	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	a0005	550	1	0	0	0	0	1	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	a0006	550	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF383_chr19_37213214_37253740	1/1	a0001	475	403	90	72	185	14	40	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	a0002	475	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF384_chr12_6661477_6694375	0/1	a0001	607	202	74	43	56	2	26	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	1/0	a0002	608	56	9	10	29	2	5	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	a0003	604	4	0	3	0	0	1	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	a0004	606	2	2	0	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375