JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF384_chr12_6661477_6694375	0/0	a0005	609	2	1	1	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	a0006	575	1	0	1	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	a0007	607	1	0	0	1	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF385A_chr12_54364136_54389733	1/1	a0001	366	428	96	76	206	10	38	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	a0002	366	1	1	0	0	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	a0003	366	1	1	0	0	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385B_chr2_179436982_179866612	0/0	a0001	486	104	34	36	20	4	10	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	a0002	486	14	12	2	0	0	0	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385C_chr17_42020576_42103473	1/1	a0001	503	232	89	40	78	7	16	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	a0002	503	1	1	0	0	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	a0003	503	1	0	0	1	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	a0004	503	1	0	0	1	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	a0005	503	1	0	0	0	1	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385D_chr3_21407218_21756210	1/1	a0001	395	246	70	52	80	10	32	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	a0002	395	10	10	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF391_chr6_27383759_27408908	1/1	a0001	358	386	92	74	163	10	45	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	a0002	358	13	0	0	13	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	a0003	358	2	2	0	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	a0004	358	1	0	0	0	0	1	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	a0005	358	1	0	0	1	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	a0006	358	1	0	0	1	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF394_chr7_99488240_99505281	1/1	a0001	561	355	86	56	155	13	43	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	a0002	561	5	5	0	0	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	a0003	561	4	3	1	0	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	a0004	561	2	0	1	0	1	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	a0005	561	2	0	0	2	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	a0006	561	1	0	0	0	0	1	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	a0007	561	1	0	0	1	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	a0008	552	1	0	0	1	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF394_chr7_99488240_99505281	0/0	a0009	561	1	0	0	1	0	0	copy fasta	ZNF394	chr7	99488240	99505281
ZNF395_chr8_28340590_28391460	1/1	a0001	513	373	87	56	184	10	34	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	a0002	513	1	0	0	1	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	a0003	513	1	1	0	0	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF395_chr8_28340590_28391460	0/0	a0004	513	1	0	0	1	0	0	copy fasta	ZNF395	chr8	28340590	28391460
ZNF396_chr18_35361694_35382337	1/1	a0001	335	389	77	71	188	13	38	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	a0002	335	16	16	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	a0003	335	1	0	0	0	1	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	a0004	335	1	1	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	a0005	335	1	1	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	a0006	335	1	0	1	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF396_chr18_35361694_35382337	0/0	a0007	335	1	1	0	0	0	0	copy fasta	ZNF396	chr18	35361694	35382337
ZNF397_chr18_35236034_35254808	1/1	a0001	534	438	97	74	216	14	35	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	a0002	534	1	0	0	0	0	1	copy fasta	ZNF397	chr18	35236034	35254808
ZNF397_chr18_35236034_35254808	0/0	a0003	534	1	1	0	0	0	0	copy fasta	ZNF397	chr18	35236034	35254808
ZNF398_chr7_149142453_149188042	1/1	a0001	642	285	88	67	77	15	36	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	a0002	642	27	6	5	15	1	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	a0003	642	2	2	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF3_chr7_100064973_100086723	1/1	a0001	446	357	83	59	153	16	44	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	a0002	446	54	6	13	29	2	4	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	a0003	445	5	0	0	5	0	0	copy fasta	ZNF3	chr7	100064973	100086723