JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF3_chr7_100064973_100086723	0/0	a0004	446	1	0	0	0	0	1	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	a0005	446	1	1	0	0	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	a0006	446	1	0	0	0	0	1	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	a0007	446	1	0	0	1	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF404_chr19_43867365_43888964	0/0	a0001	552	179	48	28	77	8	18	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0002	552	162	12	39	87	9	15	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0003	184	19	19	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0004	184	5	4	1	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0005	552	5	1	3	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0006	552	4	4	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0007	552	2	2	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0008	552	2	0	1	0	1	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0009	552	1	1	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0010	552	1	0	0	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0011	177	1	0	0	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0012	552	1	0	0	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0013	552	1	1	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0014	552	1	0	0	0	0	1	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0015	552	1	0	0	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	a0016	552	1	0	0	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF407_chr18_74592870_75070671	1/0	a0001	2248	38	15	14	5	1	2	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/1	a0002	2248	19	11	1	4	0	2	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	a0003	2248	13	7	6	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	a0004	2248	10	4	4	1	1	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	a0005	2248	2	2	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	a0006	2248	2	0	2	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	a0007	2248	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	a0008	2248	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	a0009	2248	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	a0010	2248	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	a0011	2248	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	a0012	2248	1	0	1	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	a0013	2248	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	a0014	2248	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF408_chr11_46696031_46710912	0/0	a0000	0	1	1	0	0	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	1/0	a0001	720	249	86	52	67	11	32	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/1	a0002	716	100	1	16	76	1	5	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	a0003	720	5	5	0	0	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	a0004	720	1	0	0	1	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	a0005	716	1	0	0	1	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	a0006	720	1	0	1	0	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	a0007	720	1	0	0	0	0	1	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	a0008	328	1	0	0	1	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	a0009	720	1	0	1	0	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	a0010	720	1	1	0	0	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF410_chr14_73881859_73937521	1/1	a0001	478	399	90	68	181	14	44	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	a0002	478	1	0	0	1	0	0	copy fasta	ZNF410	chr14	73881859	73937521
ZNF414_chr19_8504678_8519167	1/1	a0001	390	176	50	45	53	8	18	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	a0002	390	136	18	22	83	4	9	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	a0003	390	71	21	10	30	4	6	copy fasta	ZNF414	chr19	8504678	8519167