JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF414_chr19_8504678_8519167	0/0	a0004	226	13	0	3	7	0	3	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	a0005	226	11	3	0	3	0	5	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	a0006	226	6	3	2	1	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	a0007	390	5	2	0	2	0	1	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	a0008	390	1	0	1	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	a0009	390	1	0	1	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	a0010	390	1	1	0	0	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	a0011	390	1	0	0	1	0	0	copy fasta	ZNF414	chr19	8504678	8519167
ZNF415_chr19_53102879_53137910	1/0	a0001	555	149	30	25	66	4	23	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0002	555	109	16	23	53	5	12	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/1	a0003	555	88	1	16	62	5	3	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0004	555	35	20	13	0	0	2	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0005	555	22	21	1	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0006	555	6	0	3	0	2	1	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0007	555	5	0	0	5	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0008	555	4	4	0	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0009	555	3	0	0	3	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0010	555	1	0	0	1	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0011	555	1	0	0	1	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0012	555	1	0	0	1	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0013	555	1	0	0	1	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0014	555	1	0	1	0	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0015	555	1	0	0	0	0	1	copy fasta	ZNF415	chr19	53102879	53137910
ZNF415_chr19_53102879_53137910	0/0	a0016	555	1	0	0	1	0	0	copy fasta	ZNF415	chr19	53102879	53137910
ZNF416_chr19_57566566_57583911	1/1	a0001	594	415	88	68	197	14	46	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	a0002	594	7	0	0	7	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	a0003	594	3	3	0	0	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	a0004	594	1	1	0	0	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	a0005	594	1	0	0	1	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF416_chr19_57566566_57583911	0/0	a0006	594	1	0	0	1	0	0	copy fasta	ZNF416	chr19	57566566	57583911
ZNF417_chr19_57900774_57921592	0/0	a0001	575	162	55	24	66	6	11	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	1/1	a0002	575	118	6	28	59	7	16	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0003	575	101	14	16	55	4	12	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0004	575	9	9	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0005	575	6	0	4	0	1	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0006	575	5	0	5	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0007	575	4	0	1	3	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0008	314	4	4	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0009	575	4	0	0	4	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0010	575	3	3	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0011	575	3	0	0	2	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0012	575	3	0	0	3	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0013	575	2	2	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0014	575	2	2	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0015	575	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0016	575	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0017	440	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0018	575	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0019	575	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0020	575	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592