JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF417_chr19_57900774_57921592	0/0	a0021	575	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0022	575	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0023	575	1	0	0	0	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	a0024	575	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF418_chr19_57916882_57940402	1/1	a0001	676	404	83	75	184	18	42	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0002	676	5	5	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0003	676	4	0	0	4	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0004	663	3	3	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0005	676	2	1	1	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0006	676	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0007	676	1	1	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0008	676	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0009	672	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0010	676	1	1	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0011	526	1	1	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0012	676	1	0	1	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0013	620	1	0	1	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0014	676	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	a0015	676	1	1	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF419_chr19_57482750_57501098	0/1	a0001	510	269	47	54	122	10	35	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	1/0	a0002	510	139	46	16	61	5	10	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	a0003	510	3	0	2	0	0	1	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	a0004	510	2	0	0	0	0	2	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	a0005	510	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	a0006	510	1	0	0	0	1	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	a0007	510	1	1	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	a0008	510	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	a0009	510	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF41_chrX_47440178_47488222	1/1	a0001	779	277	53	54	127	11	30	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	a0002	779	13	7	2	4	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	a0003	779	8	7	1	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	a0004	779	8	8	0	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	a0005	779	4	0	0	4	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	a0006	779	3	0	0	3	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	a0007	779	3	0	0	0	2	1	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	a0008	779	2	0	0	2	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	a0009	779	2	2	0	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	a0010	779	1	1	0	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	a0011	779	1	0	0	0	0	1	copy fasta	ZNF41	chrX	47440178	47488222
ZNF420_chr19_37073433_37135368	1/1	a0001	688	323	85	68	119	12	37	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	a0002	688	1	1	0	0	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	a0003	688	1	0	0	0	0	1	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	a0004	688	1	0	0	1	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF423_chr16_49482524_49861112	1/1	a0001	1292	187	54	45	59	9	18	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	a0002	1292	3	0	0	1	1	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	a0003	1292	2	0	1	0	0	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	a0004	1292	2	2	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	a0005	1292	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	a0006	40	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF425_chr7_149097784_149131324	1/1	a0001	752	289	76	58	105	15	33	copy fasta	ZNF425	chr7	149097784	149131324