JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF425_chr7_149097784_149131324	0/0	a0002	752	19	18	1	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	a0003	752	3	0	2	0	1	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	a0004	752	3	3	0	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	a0005	752	2	0	2	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	a0006	752	1	0	0	0	0	1	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	a0007	752	1	0	0	1	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	a0008	752	1	1	0	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	a0009	752	1	0	1	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF426_chr19_9518223_9543645	1/1	a0001	554	346	50	56	182	18	38	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	a0002	554	66	42	14	3	0	7	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	a0003	554	7	0	2	5	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	a0004	554	1	0	0	0	0	1	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	a0005	554	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	a0006	554	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	a0007	554	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	a0008	554	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF428_chr19_43602224_43624629	1/1	a0001	188	423	91	80	188	14	48	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	a0002	188	1	0	0	0	1	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	a0003	188	1	0	0	0	1	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	a0004	188	1	1	0	0	0	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF429_chr19_21500602_21545668	1/1	a0001	674	209	54	22	105	9	17	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	a0002	674	3	0	0	3	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	a0003	674	2	0	0	0	0	2	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	a0004	674	2	2	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	a0005	674	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	a0006	674	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	a0007	674	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	a0008	674	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	a0009	674	1	0	0	0	1	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	a0010	674	1	0	0	0	0	1	copy fasta	ZNF429	chr19	21500602	21545668
ZNF430_chr19_21015657_21065050	1/1	a0001	570	293	81	56	96	14	44	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	a0002	570	2	2	0	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	a0003	570	1	0	1	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	a0004	570	1	1	0	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	a0005	570	1	0	1	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF431_chr19_21137040_21201053	1/1	a0001	576	248	60	44	105	11	26	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	a0002	576	42	28	9	0	3	2	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	a0003	576	2	0	2	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	a0004	576	1	0	1	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	a0005	576	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF432_chr19_52026378_52053838	1/1	a0001	652	420	95	71	191	15	46	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	a0002	652	4	0	3	0	1	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	a0003	652	2	0	0	2	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	a0004	652	1	0	0	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	a0005	652	1	1	0	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF433_chr19_12009715_12040679	1/1	a0001	670	317	93	55	121	10	36	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	a0002	670	14	0	0	14	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	a0003	670	2	0	0	2	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	a0004	670	2	2	0	0	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	a0005	670	1	0	1	0	0	0	copy fasta	ZNF433	chr19	12009715	12040679