JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF433_chr19_12009715_12040679	0/0	a0006	670	1	0	0	1	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	a0007	670	1	0	0	0	0	1	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	a0008	630	1	1	0	0	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	a0009	670	1	0	0	0	0	1	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	a0010	670	1	0	0	1	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	a0011	670	1	0	0	1	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF436_chr1_23354448_23374836	1/1	a0001	470	382	85	69	175	16	35	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	a0002	470	3	3	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	a0003	470	2	2	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	a0004	470	2	0	0	2	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	a0005	470	1	0	0	1	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	a0006	470	1	0	0	0	0	1	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	a0007	470	1	0	1	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF438_chr10_30839632_31036865	1/0	a0001	828	165	30	37	61	15	21	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/1	a0002	828	113	30	17	52	3	10	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0003	828	14	13	1	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0004	828	5	0	4	1	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0005	828	4	4	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0006	828	3	0	3	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0007	828	2	0	0	2	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0008	828	1	1	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0009	828	1	1	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0010	828	1	1	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0011	828	1	0	0	1	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0012	828	1	0	1	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0013	828	1	0	1	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0014	828	1	0	0	1	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0015	828	1	1	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0016	828	1	0	0	0	0	1	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	a0017	828	1	1	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF439_chr19_11843726_11874486	1/1	a0001	504	266	78	58	90	8	30	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	a0002	504	19	1	8	1	5	4	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	a0003	504	16	0	3	11	1	1	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	a0004	504	9	0	0	9	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	a0005	504	7	7	0	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	a0006	504	1	0	1	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	a0007	504	1	0	0	1	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	a0008	504	1	0	0	0	0	1	copy fasta	ZNF439	chr19	11843726	11874486
ZNF43_chr19_21799946_21841182	1/1	a0001	809	371	90	63	161	15	40	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	a0002	809	2	2	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	a0003	809	2	0	0	2	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	a0004	809	1	0	0	1	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	a0005	809	1	1	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	a0006	809	1	0	1	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	a0007	809	1	0	0	0	1	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	a0008	809	1	1	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF440_chr19_11809273_11840216	0/1	a0001	595	159	10	33	87	10	18	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0002	595	87	25	8	48	0	6	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0003	595	77	36	17	11	4	9	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0004	595	15	0	2	13	0	0	copy fasta	ZNF440	chr19	11809273	11840216