JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF440_chr19_11809273_11840216	1/0	a0005	595	10	1	5	0	1	2	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0006	595	9	7	1	0	1	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0007	595	2	0	2	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0008	595	2	2	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0009	595	2	0	0	2	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0010	595	1	1	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0011	411	1	0	1	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0012	590	1	1	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0013	595	1	0	1	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0014	595	1	0	1	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0015	595	1	0	0	1	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0016	595	1	0	0	1	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0017	595	1	0	0	1	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0018	595	1	0	1	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0019	595	1	0	0	0	0	1	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0020	595	1	0	0	1	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0021	595	1	1	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	a0022	2	1	0	0	1	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF441_chr19_11762000_11789078	0/1	a0001	693	333	76	59	160	7	30	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	1/0	a0002	693	34	3	12	9	5	4	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	a0003	693	2	2	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	a0004	693	2	0	0	2	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	a0005	693	1	1	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	a0006	693	1	0	0	0	0	1	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	a0007	693	1	0	0	0	0	1	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	a0008	693	1	1	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	a0009	693	1	0	1	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	a0010	693	1	1	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	a0011	693	1	0	0	1	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF442_chr19_12340944_12370683	1/1	a0001	627	250	55	48	96	12	37	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0002	627	17	15	2	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0003	627	6	6	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0004	627	5	5	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0005	72	4	4	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0006	296	3	1	0	2	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0007	627	2	2	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0008	627	2	2	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0009	627	2	0	1	0	1	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0010	627	2	2	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0011	627	1	0	0	0	1	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0012	627	1	0	0	0	0	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0013	627	1	0	0	0	0	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0014	627	1	0	0	0	0	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0015	627	1	0	1	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0016	627	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	a0017	627	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF443_chr19_12424706_12446021	0/0	a0000	0	109	38	16	32	3	20	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	1/1	a0001	671	165	32	28	87	2	14	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	a0002	671	60	8	22	22	5	3	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	a0003	671	55	8	5	37	1	4	copy fasta	ZNF443	chr19	12424706	12446021