JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF443_chr19_12424706_12446021	0/0	a0004	215	5	3	0	2	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	a0005	671	5	4	1	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	a0006	215	2	0	0	2	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	a0007	671	2	0	0	2	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	a0008	671	2	0	0	2	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	a0009	671	1	0	0	1	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	a0010	215	1	0	0	1	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	a0011	671	1	0	0	0	0	1	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	a0012	671	1	1	0	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	a0013	671	1	0	0	0	1	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF444_chr19_56136287_56165893	1/1	a0001	327	387	83	76	174	14	38	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	a0002	324	9	5	2	0	2	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	a0003	246	6	0	1	5	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	a0004	330	4	4	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	a0005	327	3	1	2	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	a0006	327	2	0	0	0	0	2	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	a0007	327	1	0	0	1	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	a0008	327	1	0	1	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	a0009	327	1	0	1	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	a0010	327	1	1	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	a0011	327	1	0	1	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF445_chr3_44426705_44482670	1/1	a0001	1031	225	91	50	50	10	22	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	a0002	1031	7	1	5	0	0	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	a0003	1031	3	1	0	0	1	1	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	a0004	1031	2	0	0	0	2	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	a0005	1031	2	0	0	2	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	a0006	1031	1	0	0	0	1	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	a0007	1031	1	0	1	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	a0008	1031	1	1	0	0	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	a0009	1031	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	a0010	1031	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	a0011	1031	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF445_chr3_44426705_44482670	0/0	a0012	1031	1	0	0	1	0	0	copy fasta	ZNF445	chr3	44426705	44482670
ZNF446_chr19_58471352_58486230	1/0	a0001	450	257	35	52	139	9	21	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/1	a0002	450	94	26	12	43	6	6	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	a0003	450	58	20	18	12	1	7	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	a0004	450	10	9	0	0	0	1	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	a0005	450	5	0	0	5	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	a0006	450	3	0	0	3	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	a0007	450	2	0	0	0	2	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	a0008	450	1	0	0	0	0	1	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	a0009	450	1	0	0	1	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	a0010	450	1	1	0	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	a0011	450	1	1	0	0	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF446_chr19_58471352_58486230	0/0	a0012	450	1	0	0	1	0	0	copy fasta	ZNF446	chr19	58471352	58486230
ZNF449_chrX_135339796_135368413	1/1	a0001	518	292	64	57	136	9	24	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	a0002	220	1	0	0	1	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF449_chrX_135339796_135368413	0/0	a0003	518	1	0	0	1	0	0	copy fasta	ZNF449	chrX	135339796	135368413
ZNF44_chr19_12266808_12299883	1/0	a0001	615	248	69	41	110	8	19	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/1	a0002	615	103	16	22	52	4	8	copy fasta	ZNF44	chr19	12266808	12299883