JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF44_chr19_12266808_12299883	0/0	a0003	615	7	7	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	a0004	615	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	a0005	615	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	a0006	615	1	0	0	0	0	1	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	a0007	615	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	a0008	615	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	a0009	615	1	0	1	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF451_chr6_57085188_57175305	1/1	a0001	1061	191	71	44	52	10	12	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	a0002	1061	1	0	0	0	0	1	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	a0003	1061	1	1	0	0	0	0	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	a0004	1061	1	0	0	0	0	1	copy fasta	ZNF451	chr6	57085188	57175305
ZNF454_chr5_178936198_178971433	0/1	a0001	522	264	53	49	119	14	28	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	a0002	522	111	5	19	71	2	14	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	1/0	a0003	522	28	25	2	0	0	0	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	a0004	522	2	0	0	0	0	2	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	a0005	522	1	1	0	0	0	0	copy fasta	ZNF454	chr5	178936198	178971433
ZNF45_chr19_43907624_43940282	0/0	a0001	682	198	25	49	97	10	17	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	1/1	a0002	682	124	48	22	28	6	18	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	a0003	682	62	7	5	49	0	1	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	a0004	682	8	8	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	a0005	682	4	4	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	a0006	682	1	0	0	1	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	a0007	681	1	0	0	1	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	a0008	682	1	1	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	a0009	682	1	1	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF460_chr19_57275485_57299069	1/1	a0001	562	434	97	81	195	16	43	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	a0002	562	3	0	0	3	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	a0003	562	1	1	0	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	a0004	562	1	0	1	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	a0005	562	1	0	0	0	0	1	copy fasta	ZNF460	chr19	57275485	57299069
ZNF461_chr19_36631618_36671837	1/1	a0001	563	300	74	57	122	13	32	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	a0002	563	40	13	7	17	0	3	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	a0003	562	6	0	5	0	0	1	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	a0004	563	6	0	5	0	1	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	a0005	563	1	0	0	1	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	a0006	563	1	1	0	0	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF462_chr9_106858166_107018634	0/0	a0001	2506	91	55	8	25	1	2	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	1/0	a0002	2506	50	4	5	32	4	4	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0003	2506	16	1	3	7	1	4	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0004	2506	10	10	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/1	a0005	2506	9	3	4	0	0	1	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0006	2506	3	3	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0007	2506	2	1	1	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0008	2506	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0009	2506	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0010	2506	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0011	2506	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0012	2506	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0013	2506	1	0	0	0	0	1	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	a0014	2506	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634