JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF469_chr16_88377959_88445753	0/0	a0119	3953	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0120	3953	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0121	3953	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0122	3953	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0123	3953	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0124	3953	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0125	3953	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0126	3953	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0127	736	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0128	3953	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0129	3953	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	1/0	a0130	3953	1	0	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0131	3953	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0132	3953	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0133	3953	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0134	3953	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0135	3953	1	0	0	0	0	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0136	3953	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0137	3953	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	a0138	3953	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF470_chr19_56562468_56587894	0/1	a0001	717	132	11	28	72	7	13	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	a0002	717	130	70	23	15	7	15	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	1/0	a0003	717	102	1	23	58	4	15	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	a0004	717	37	0	2	31	0	4	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	a0005	717	10	10	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	a0006	717	2	2	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	a0007	717	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	a0008	717	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	a0009	717	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	a0010	717	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	a0011	717	1	0	0	0	0	1	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	a0012	717	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	a0013	717	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF471_chr19_56502855_56535212	1/0	a0001	626	247	52	43	123	4	24	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/1	a0002	626	89	15	17	38	4	14	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	a0003	626	43	23	5	10	2	3	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	a0004	626	16	1	8	0	2	5	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	a0005	626	6	0	0	6	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	a0006	626	5	0	0	5	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	a0007	626	2	0	2	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	a0008	626	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	a0009	626	1	0	1	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	a0010	626	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	a0011	626	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF473_chr19_50021005_50053776	1/1	a0001	871	380	70	63	188	12	45	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	a0002	871	23	20	3	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	a0003	871	6	6	0	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	a0004	871	3	0	0	3	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	a0005	871	1	1	0	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	a0006	871	1	1	0	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776