JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF473_chr19_50021005_50053776	0/0	a0007	871	1	0	0	1	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	a0008	871	1	0	0	0	0	1	copy fasta	ZNF473	chr19	50021005	50053776
ZNF474_chr5_122124546_122158569	1/0	a0001	364	206	45	45	85	9	21	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/1	a0002	364	66	0	13	37	3	12	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0003	317	47	27	5	11	0	4	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0004	317	31	5	2	24	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0005	364	6	6	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0006	364	5	4	1	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0007	317	4	4	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0008	364	4	0	0	4	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0009	364	3	0	1	0	0	2	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0010	364	2	0	1	1	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0011	317	2	2	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0012	364	2	0	0	0	0	2	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0013	364	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0014	364	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0015	364	1	0	0	1	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0016	364	1	0	0	0	0	1	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0017	317	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0018	364	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0019	364	1	0	0	1	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	a0020	364	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF479_chr7_57112676_57137436	1/0	a0001	524	227	63	35	96	8	24	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/1	a0002	524	107	5	27	51	6	17	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0003	524	45	0	1	44	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0004	524	12	11	1	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0005	524	12	6	4	0	0	2	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0006	524	4	1	0	3	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0007	524	4	4	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0008	524	3	0	0	3	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0009	524	3	2	1	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0010	524	2	2	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0011	134	1	0	0	0	0	1	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0012	524	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0013	524	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0014	524	1	0	0	0	0	1	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0015	524	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0016	524	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0017	524	1	0	1	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0018	299	1	0	0	0	0	1	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0019	524	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0020	524	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0021	524	1	1	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0022	194	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	a0023	524	1	1	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF480_chr19_52292169_52330922	0/1	a0001	2	220	30	46	111	8	24	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	1/0	a0002	535	155	61	32	45	4	12	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	a0003	535	2	2	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	a0004	535	1	1	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF483_chr9_111520179_111560417	1/1	a0001	744	402	92	56	192	16	44	copy fasta	ZNF483	chr9	111520179	111560417