JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF484_chr9_92839182_92883038	1/1	a0001	852	339	81	57	146	14	39	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	a0002	852	56	1	1	52	0	2	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	a0003	852	2	0	0	1	0	1	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	a0004	852	1	0	1	0	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	a0005	852	1	0	0	1	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	a0006	852	1	0	1	0	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	a0007	852	1	0	0	1	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	a0008	852	1	0	0	1	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF485_chr10_43601438_43622904	1/0	a0001	441	375	67	62	193	10	42	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/1	a0002	441	44	22	14	1	4	2	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	a0003	441	19	6	4	3	2	4	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	a0004	441	2	2	0	0	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	a0005	441	1	0	0	1	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	a0006	441	1	1	0	0	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF486_chr19_20162214_20205488	1/0	a0001	463	352	70	64	162	11	44	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	a0002	463	20	14	4	0	0	2	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	a0003	463	5	5	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/1	a0004	209	1	0	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	a0005	463	1	0	0	0	0	1	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	a0006	463	1	0	0	0	1	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	a0007	463	1	1	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	a0008	463	1	0	0	0	0	1	copy fasta	ZNF486	chr19	20162214	20205488
ZNF487_chr10_43432111_43488181	1/1	a0001	207	316	83	66	124	15	26	copy fasta	ZNF487	chr10	43432111	43488181
ZNF487_chr10_43432111_43488181	0/0	a0002	207	10	0	1	6	1	2	copy fasta	ZNF487	chr10	43432111	43488181
ZNF487_chr10_43432111_43488181	0/0	a0003	207	4	4	0	0	0	0	copy fasta	ZNF487	chr10	43432111	43488181
ZNF487_chr10_43432111_43488181	0/0	a0004	207	2	1	1	0	0	0	copy fasta	ZNF487	chr10	43432111	43488181
ZNF488_chr10_47360496_47389293	1/1	a0001	340	390	80	56	197	14	41	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	a0002	340	33	13	4	13	1	2	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	a0003	340	6	0	6	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	a0004	340	4	0	3	0	1	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	a0005	340	2	0	0	2	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	a0006	340	1	0	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	a0007	340	1	0	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	a0008	340	1	0	0	1	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	a0009	340	1	0	0	1	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	a0010	340	1	0	0	0	0	1	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	a0011	340	1	0	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	a0012	340	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	a0013	340	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	a0014	340	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF48_chr16_30390420_30405108	0/0	a0001	618	248	39	53	113	11	32	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	1/1	a0002	618	90	34	23	20	2	9	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	a0003	618	11	11	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	a0004	618	3	1	1	0	1	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	a0005	618	1	0	1	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	a0006	618	1	0	0	1	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	a0007	618	1	0	0	0	0	1	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	a0008	618	1	1	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF490_chr19_12571100_12615813	1/1	a0001	529	361	90	66	147	14	42	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	a0002	529	2	2	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813