JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF490_chr19_12571100_12615813	0/0	a0003	225	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	a0004	529	1	0	1	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	a0005	529	1	0	1	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF491_chr19_11793523_11813503	1/1	a0001	437	379	80	75	177	17	28	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	a0002	437	2	0	0	2	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	a0003	437	2	2	0	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	a0004	150	2	2	0	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	a0005	437	1	0	0	0	1	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	a0006	437	1	0	1	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	a0007	437	1	0	0	1	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	a0008	437	1	0	0	1	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	a0009	437	1	0	0	1	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF492_chr19_22629324_22672671	1/1	a0001	531	219	51	41	93	9	23	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0002	531	43	4	9	23	2	5	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0003	531	34	1	9	23	1	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0004	531	25	24	1	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0005	531	22	1	1	20	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0006	531	8	8	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0007	531	3	2	1	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0008	531	2	0	2	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0009	531	2	2	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0010	531	2	2	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0011	531	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0012	531	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0013	531	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0014	503	1	0	0	0	0	1	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0015	531	1	0	0	0	0	1	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	a0016	531	1	0	0	1	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF493_chr19_21392133_21432577	0/0	a0001	774	186	51	28	72	10	25	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	1/0	a0002	774	124	29	24	56	4	10	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/1	a0003	774	38	2	13	14	4	4	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	a0004	746	3	3	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	a0005	774	2	0	2	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	a0006	774	2	0	0	2	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	a0007	774	1	1	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	a0008	746	1	0	0	0	0	1	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	a0009	774	1	0	1	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	a0010	774	1	1	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	a0011	774	1	1	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF496_chr1_247292415_247336867	1/1	a0001	587	333	84	68	123	16	40	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	a0002	587	7	0	0	7	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	a0003	587	7	0	0	7	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	a0004	587	1	1	0	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	a0005	587	1	1	0	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	a0006	587	1	0	0	1	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	a0007	587	1	0	0	1	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	a0008	587	1	0	0	1	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF497_chr19_58349357_58367751	1/0	a0001	498	252	43	56	119	15	18	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	a0002	498	142	46	25	42	3	26	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	a0003	498	3	0	0	3	0	0	copy fasta	ZNF497	chr19	58349357	58367751