JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF497_chr19_58349357_58367751	0/0	a0004	498	3	2	1	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	a0005	498	1	0	0	1	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	a0006	498	1	0	1	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	a0007	498	1	0	0	1	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	a0008	498	1	1	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/1	a0009	498	1	0	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	a0010	498	1	0	0	1	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	a0011	498	1	0	1	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	a0012	498	1	1	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	a0013	498	1	0	0	1	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	a0014	498	1	1	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF500_chr16_4743239_4772162	1/1	a0001	480	385	75	75	172	18	43	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	a0002	480	12	10	2	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	a0003	480	3	0	1	2	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	a0004	480	2	2	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	a0005	480	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	a0006	480	1	0	0	0	0	1	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	a0007	480	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	a0008	480	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	a0009	480	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	a0010	480	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	a0011	480	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	a0012	480	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	a0013	480	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	a0014	480	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF501_chr3_44724635_44742083	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/1	a0001	271	245	57	54	93	12	28	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	1/0	a0002	271	96	32	18	25	4	16	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	a0003	271	7	7	0	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	a0004	271	1	0	0	1	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	a0005	271	1	1	0	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	a0006	271	1	1	0	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF502_chr3_44707660_44728831	0/0	a0001	544	152	15	23	86	5	23	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	1/0	a0002	544	145	63	31	29	5	16	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/1	a0003	544	42	0	20	11	5	5	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	a0004	544	10	9	0	0	1	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	a0005	544	8	8	0	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	a0006	544	2	2	0	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	a0007	544	2	0	2	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	a0008	544	1	0	0	1	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	a0009	544	1	0	0	1	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF502_chr3_44707660_44728831	0/0	a0010	544	1	1	0	0	0	0	copy fasta	ZNF502	chr3	44707660	44728831
ZNF503_chr10_75392830_75406764	1/1	a0001	646	332	58	65	156	15	36	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	a0002	644	33	29	3	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	a0003	650	3	0	0	0	1	2	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	a0004	644	1	1	0	0	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	a0005	646	1	0	0	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	a0006	646	1	0	0	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF503_chr10_75392830_75406764	0/0	a0007	646	1	0	0	1	0	0	copy fasta	ZNF503	chr10	75392830	75406764
ZNF506_chr19_19787711_19826750	1/1	a0001	444	384	65	69	187	11	50	copy fasta	ZNF506	chr19	19787711	19826750