JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF506_chr19_19787711_19826750	0/0	a0002	444	21	17	3	0	1	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	a0003	444	10	8	2	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	a0004	444	1	1	0	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	a0005	131	1	0	0	1	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF506_chr19_19787711_19826750	0/0	a0006	3	1	1	0	0	0	0	copy fasta	ZNF506	chr19	19787711	19826750
ZNF507_chr19_32340610_32392667	1/1	a0001	953	356	90	62	153	13	36	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	a0002	953	3	0	0	3	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	a0003	953	1	1	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	a0004	953	1	1	0	0	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	a0005	953	1	0	0	0	1	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	a0006	953	1	0	0	1	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF507_chr19_32340610_32392667	0/0	a0007	953	1	0	0	1	0	0	copy fasta	ZNF507	chr19	32340610	32392667
ZNF510_chr9_96749553_96783087	1/1	a0001	683	199	60	41	71	6	19	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	a0002	683	47	2	1	43	0	1	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	a0003	683	19	0	0	18	0	1	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	a0004	683	11	10	1	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	a0005	683	9	8	1	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	a0006	683	3	3	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	a0007	683	2	1	1	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	a0008	683	2	2	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	a0009	683	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	a0010	683	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	a0011	683	1	0	0	0	0	1	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	a0012	683	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	a0013	683	1	0	1	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF510_chr9_96749553_96783087	0/0	a0014	683	1	1	0	0	0	0	copy fasta	ZNF510	chr9	96749553	96783087
ZNF511_chr10_133303914_133318161	1/1	a0001	252	278	90	58	81	16	31	copy fasta	ZNF511	chr10	133303914	133318161
ZNF511_chr10_133303914_133318161	0/0	a0002	252	2	2	0	0	0	0	copy fasta	ZNF511	chr10	133303914	133318161
ZNF511_chr10_133303914_133318161	0/0	a0003	252	1	0	0	0	0	1	copy fasta	ZNF511	chr10	133303914	133318161
ZNF511_chr10_133303914_133318161	0/0	a0004	252	1	0	0	1	0	0	copy fasta	ZNF511	chr10	133303914	133318161
ZNF512B_chr20_63951704_63974930	1/1	a0001	892	319	76	54	133	14	40	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	a0002	892	20	0	12	2	0	6	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	a0003	892	5	5	0	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	a0004	892	2	0	2	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	a0005	892	2	0	2	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	a0006	892	1	1	0	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	a0007	892	1	0	1	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	a0008	510	1	0	1	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	a0009	892	1	0	0	1	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	a0010	892	1	0	0	1	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	a0011	892	1	0	0	1	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	a0012	892	1	0	1	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	a0013	889	1	0	1	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512_chr2_27578042_27628217	1/1	a0001	567	330	80	58	140	14	36	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	a0002	567	1	0	0	1	0	0	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	a0003	567	1	0	0	1	0	0	copy fasta	ZNF512	chr2	27578042	27628217
ZNF513_chr2_27372235_27385734	1/1	a0001	541	353	74	65	154	14	44	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	a0002	541	3	3	0	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	a0003	541	2	2	0	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	a0004	541	1	0	1	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734