JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF513_chr2_27372235_27385734	0/0	a0005	541	1	1	0	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF514_chr2_95140000_95164848	1/1	a0001	400	364	90	66	154	14	38	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	a0002	400	1	0	0	0	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	a0003	400	1	0	0	0	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF516_chr18_76352682_76500242	1/1	a0001	1163	278	57	47	121	12	39	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0002	1163	29	14	5	6	0	4	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0003	1163	8	1	4	2	1	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0004	1163	7	5	0	0	0	2	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0005	1163	5	0	0	5	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0006	1163	3	2	0	0	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0007	1163	2	0	2	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0008	1163	2	0	2	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0009	1163	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0010	1163	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0011	1163	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0012	1163	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0013	1163	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0014	1163	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0015	1163	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0016	1163	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0017	1163	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0018	1163	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0019	1163	1	0	0	0	1	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	a0020	1163	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF517_chr8_144793913_144815084	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/1	a0001	492	377	76	76	169	14	41	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	a0002	492	10	9	1	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	a0003	492	7	3	2	0	0	2	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	a0004	492	5	5	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	1/0	a0005	492	2	0	0	0	0	1	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	a0006	229	2	0	0	2	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	a0007	8	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	a0008	492	1	0	0	1	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	a0009	492	1	0	0	1	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	a0010	492	1	0	1	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF518A_chr10_96125297_96168759	1/1	a0001	1483	254	80	65	70	14	23	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0002	1483	54	0	1	46	0	7	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0003	1483	49	9	0	37	0	3	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0004	1483	18	0	6	6	1	5	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0005	1483	7	1	4	0	1	1	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0006	1483	2	0	0	0	0	2	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0007	1483	1	0	1	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0008	1483	1	1	0	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0009	1483	1	0	0	1	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0010	1483	1	0	1	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0011	1483	1	0	0	0	0	1	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0012	1483	1	0	0	1	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0013	1483	1	0	0	0	0	1	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0014	1483	1	0	0	0	0	1	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	a0015	1483	1	0	0	1	0	0	copy fasta	ZNF518A	chr10	96125297	96168759