JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF518A_chr10_96125297_96168759	0/0	a0016	1483	1	1	0	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518B_chr4_10434880_10462426	0/1	a0001	1074	240	44	45	116	10	24	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0002	1074	91	9	23	44	5	10	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0003	1074	68	28	1	35	0	4	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0004	1074	12	5	5	1	0	1	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0005	1074	4	4	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	1/0	a0006	1074	4	3	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0007	1074	3	0	0	3	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0008	1074	2	0	1	0	0	1	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0009	1074	2	0	0	2	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0010	1074	2	0	0	2	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0011	1074	1	0	0	1	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0012	1074	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0013	1074	1	0	0	0	1	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0014	1074	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0015	1074	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	a0016	1074	1	0	1	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF519_chr18_14094938_14137435	0/0	a0001	540	155	69	37	21	8	20	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	a0002	540	88	0	21	64	1	2	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	a0003	540	80	1	16	51	4	8	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	a0004	540	74	10	3	54	0	7	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	a0005	540	8	8	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	1/0	a0006	540	5	4	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	a0007	540	3	3	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	a0008	512	2	0	1	0	1	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	a0009	128	1	0	0	1	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	a0010	540	1	1	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	a0011	540	1	0	0	1	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/0	a0012	568	1	0	0	0	0	1	copy fasta	ZNF519	chr18	14094938	14137435
ZNF519_chr18_14094938_14137435	0/1	a0013	540	1	0	0	0	0	0	copy fasta	ZNF519	chr18	14094938	14137435
ZNF521_chr18_25056924_25357166	1/1	a0001	1311	210	75	30	69	8	26	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	a0002	1311	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	a0003	1311	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	a0004	1311	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	a0005	1311	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	a0006	1311	1	0	0	1	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF521_chr18_25056924_25357166	0/0	a0007	1311	1	1	0	0	0	0	copy fasta	ZNF521	chr18	25056924	25357166
ZNF524_chr19_55595288_55608138	1/1	a0001	264	420	95	88	170	18	47	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	a0002	264	2	0	0	2	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	a0003	264	1	1	0	0	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	a0004	264	1	0	0	1	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	a0005	264	1	0	0	1	0	0	copy fasta	ZNF524	chr19	55595288	55608138
ZNF524_chr19_55595288_55608138	0/0	a0006	264	1	0	0	0	0	1	copy fasta	ZNF524	chr19	55595288	55608138
ZNF525_chr19_53360705_53391590	0/1	a0001	479	230	32	51	108	10	28	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	1/0	a0002	479	205	59	29	90	8	18	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	a0003	479	2	2	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	a0004	479	2	0	2	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	a0005	479	1	1	0	0	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	a0006	479	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590
ZNF525_chr19_53360705_53391590	0/0	a0007	479	1	0	0	1	0	0	copy fasta	ZNF525	chr19	53360705	53391590