JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF541_chr19_47515690_47578148	0/0	a0008	1346	1	0	0	0	0	1	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/1	a0009	1346	1	0	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0010	1346	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0011	1346	1	0	0	1	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0012	1346	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0013	1346	1	0	0	1	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0014	1346	1	0	1	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0015	1346	1	0	1	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0016	1346	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0017	1346	1	0	0	1	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0018	1340	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0019	1346	1	0	1	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	a0020	1346	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF543_chr19_57315472_57335770	1/0	a0001	600	144	15	31	69	8	20	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/1	a0002	600	124	17	21	67	4	14	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	a0003	600	79	22	10	44	0	3	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	a0004	600	58	29	15	9	3	2	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	a0005	600	21	2	4	9	1	5	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	a0006	600	16	0	0	16	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	a0007	600	9	8	1	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	a0008	600	2	2	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	a0009	600	2	0	0	2	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	a0010	67	1	0	0	0	1	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	a0011	600	1	0	0	0	1	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	a0012	600	1	0	1	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	a0013	600	1	0	1	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	a0014	600	1	1	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF544_chr19_58223914_58268644	0/1	a0001	715	203	40	44	83	12	23	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	1/0	a0002	715	149	38	21	69	3	17	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	a0003	715	36	14	10	9	0	3	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	a0004	715	1	1	0	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	a0005	614	1	0	0	0	0	1	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	a0006	623	1	0	0	1	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	a0007	715	1	0	0	0	1	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	a0008	715	1	1	0	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	a0009	715	1	0	1	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF546_chr19_39992060_40026038	1/1	a0001	836	169	63	36	57	3	8	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	a0002	836	49	10	5	30	0	4	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	a0003	836	6	6	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	a0004	836	4	4	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	a0005	836	3	0	0	3	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	a0006	836	3	3	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	a0007	836	3	2	1	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	a0008	836	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	a0009	836	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	a0010	836	1	0	0	0	1	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	a0011	836	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	a0012	836	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	a0013	836	1	0	0	1	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	a0014	836	1	0	0	1	0	0	copy fasta	ZNF546	chr19	39992060	40026038