JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF547_chr19_57358551_57384565	1/1	a0001	402	392	84	64	185	16	41	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	a0002	402	6	6	0	0	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	a0003	402	1	0	0	0	0	1	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	a0004	402	1	1	0	0	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	a0005	402	1	1	0	0	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	a0006	402	1	0	0	1	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF548_chr19_57384854_57407992	0/0	a0001	545	312	62	61	146	13	30	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	1/1	a0002	545	61	2	5	47	2	3	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	a0003	545	22	1	3	10	1	7	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	a0004	545	20	18	2	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	a0005	545	4	3	1	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	a0006	545	2	2	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	a0007	545	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	a0008	545	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	a0009	545	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	a0010	545	1	0	0	0	0	1	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	a0011	545	1	0	0	0	0	1	copy fasta	ZNF548	chr19	57384854	57407992
ZNF549_chr19_57522356_57545876	0/1	a0001	640	341	77	67	149	15	32	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	a0002	640	14	5	0	6	0	3	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	a0003	640	12	0	0	12	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	a0004	640	11	11	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	1/0	a0005	640	7	0	3	0	1	2	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	a0006	640	4	4	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	a0007	640	2	0	0	2	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	a0008	640	1	1	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	a0009	640	1	0	0	1	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	a0010	640	1	0	0	0	0	1	copy fasta	ZNF549	chr19	57522356	57545876
ZNF550_chr19_57536838_57564863	0/1	a0001	422	259	68	38	118	7	27	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	1/0	a0002	422	144	21	37	59	9	17	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	a0003	422	2	2	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	a0004	422	1	0	1	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	a0005	422	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	a0006	422	1	0	0	1	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	a0007	422	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF550_chr19_57536838_57564863	0/0	a0008	422	1	1	0	0	0	0	copy fasta	ZNF550	chr19	57536838	57564863
ZNF551_chr19_57676977_57695648	1/1	a0001	670	362	70	75	158	16	41	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	a0002	670	33	1	4	27	0	1	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	a0003	670	12	0	0	10	0	2	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	a0004	670	10	9	1	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	a0005	670	7	0	0	7	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	a0006	670	7	7	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	a0007	670	2	2	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	a0008	670	2	2	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	a0009	670	1	1	0	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	a0010	670	1	0	1	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	a0011	670	1	0	0	1	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	a0012	670	1	0	0	1	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF551_chr19_57676977_57695648	0/0	a0013	670	1	0	1	0	0	0	copy fasta	ZNF551	chr19	57676977	57695648
ZNF552_chr19_57802082_57819913	1/1	a0001	407	399	90	76	165	18	48	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	a0002	407	28	0	6	22	0	0	copy fasta	ZNF552	chr19	57802082	57819913