JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF552_chr19_57802082_57819913	0/0	a0003	407	3	3	0	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	a0004	407	2	2	0	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	a0005	407	1	0	0	1	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF552_chr19_57802082_57819913	0/0	a0006	407	1	1	0	0	0	0	copy fasta	ZNF552	chr19	57802082	57819913
ZNF554_chr19_2814868_2841735	1/1	a0001	538	266	69	48	99	13	35	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	a0002	538	123	3	25	83	3	9	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	a0003	538	8	8	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	a0004	538	2	2	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	a0005	538	2	2	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	a0006	538	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	a0007	538	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	a0008	538	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	a0009	538	1	1	0	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	a0010	538	1	0	1	0	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	a0011	538	1	0	0	0	0	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	a0012	538	1	0	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	a0013	538	1	0	0	0	0	1	copy fasta	ZNF554	chr19	2814868	2841735
ZNF554_chr19_2814868_2841735	0/0	a0014	538	1	0	0	1	0	0	copy fasta	ZNF554	chr19	2814868	2841735
ZNF555_chr19_2836475_2865471	1/1	a0001	628	348	82	68	143	14	39	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	a0002	628	2	0	0	1	0	1	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	a0003	628	2	2	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	a0004	628	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	a0005	628	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	a0006	628	1	0	0	1	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF555_chr19_2836475_2865471	0/0	a0007	628	1	1	0	0	0	0	copy fasta	ZNF555	chr19	2836475	2865471
ZNF556_chr19_2862335_2888445	1/1	a0001	456	389	54	78	192	16	47	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	a0002	456	30	26	3	0	0	1	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	a0003	456	6	6	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	a0004	456	6	4	1	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	a0005	456	3	3	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	a0006	456	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	a0007	456	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	a0008	456	2	0	2	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	a0009	456	2	2	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	a0010	456	2	0	0	2	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	a0011	456	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	a0012	456	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	a0013	456	1	0	0	1	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF556_chr19_2862335_2888445	0/0	a0014	456	1	1	0	0	0	0	copy fasta	ZNF556	chr19	2862335	2888445
ZNF557_chr19_7064703_7092968	1/1	a0001	430	419	85	81	185	18	48	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	a0002	430	7	6	1	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	a0003	429	3	0	0	3	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	a0004	430	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	a0005	430	1	1	0	0	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF557_chr19_7064703_7092968	0/0	a0006	402	1	0	0	1	0	0	copy fasta	ZNF557	chr19	7064703	7092968
ZNF558_chr19_8801170_8837304	1/1	a0001	402	421	93	68	200	14	44	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	a0002	402	3	3	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	a0003	402	2	2	0	0	0	0	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	a0004	402	1	0	0	0	0	1	copy fasta	ZNF558	chr19	8801170	8837304
ZNF558_chr19_8801170_8837304	0/0	a0005	402	1	0	0	0	0	1	copy fasta	ZNF558	chr19	8801170	8837304