Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF565_chr19_36177276_36219665	0/0	a0001	499	230	80	41	82	13	14	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	1/1	a0002	499	126	16	31	53	5	19	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	a0003	499	23	0	0	23	0	0	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	a0004	499	3	0	0	3	0	0	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	a0005	499	2	0	2	0	0	0	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	a0006	499	1	0	0	1	0	0	copy fasta	ZNF565	chr19	36177276	36219665
ZNF565_chr19_36177276_36219665	0/0	a0007	499	1	0	0	0	0	1	copy fasta	ZNF565	chr19	36177276	36219665
ZNF566_chr19_36440119_36494561	1/1	a0001	418	298	80	60	106	10	40	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	a0002	418	2	2	0	0	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	a0003	418	1	0	0	1	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF566_chr19_36440119_36494561	0/0	a0004	418	1	0	0	1	0	0	copy fasta	ZNF566	chr19	36440119	36494561
ZNF567_chr19_36682612_36726336	1/1	a0001	647	372	88	80	148	16	38	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	a0002	647	8	0	0	7	0	1	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	a0003	647	3	0	0	0	0	3	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	a0004	647	2	0	2	0	0	0	copy fasta	ZNF567	chr19	36682612	36726336
ZNF567_chr19_36682612_36726336	0/0	a0005	647	1	0	0	1	0	0	copy fasta	ZNF567	chr19	36682612	36726336
ZNF568_chr19_36911332_36957734	1/0	a0001	644	147	30	29	65	8	14	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/1	a0002	644	104	36	34	20	4	9	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	a0003	644	88	19	7	47	2	13	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	a0004	644	5	3	2	0	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	a0005	644	1	0	0	1	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF568_chr19_36911332_36957734	0/0	a0006	644	1	0	0	1	0	0	copy fasta	ZNF568	chr19	36911332	36957734
ZNF569_chr19_37406157_37472444	1/1	a0001	686	369	82	65	172	12	36	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	a0002	686	1	0	1	0	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	a0003	686	1	0	0	1	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	a0004	686	1	1	0	0	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	a0005	686	1	0	0	1	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF569_chr19_37406157_37472444	0/0	a0006	686	1	1	0	0	0	0	copy fasta	ZNF569	chr19	37406157	37472444
ZNF570_chr19_37464356_37493652	1/1	a0001	536	371	77	64	170	14	44	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	a0002	536	7	7	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF570_chr19_37464356_37493652	0/0	a0003	536	2	2	0	0	0	0	copy fasta	ZNF570	chr19	37464356	37493652
ZNF571_chr19_37559260_37599792	1/0	a0001	609	150	43	34	54	7	11	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0002	609	109	20	10	69	1	9	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/1	a0003	609	48	6	19	11	2	9	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0004	609	15	2	8	4	0	1	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0005	609	6	6	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0006	609	2	2	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0007	609	2	1	1	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0008	609	2	0	0	2	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0009	609	1	0	0	0	1	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0010	609	1	0	0	0	1	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0011	609	1	0	0	1	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0012	609	1	1	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0013	609	1	1	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0014	609	1	0	0	1	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0015	609	1	1	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF571_chr19_37559260_37599792	0/0	a0016	609	1	1	0	0	0	0	copy fasta	ZNF571	chr19	37559260	37599792
ZNF572_chr8_124968295_124984389	1/0	a0001	529	349	67	59	175	10	37	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	a0002	529	15	11	0	3	0	1	copy fasta	ZNF572	chr8	124968295	124984389
ZNF572_chr8_124968295_124984389	0/0	a0003	529	14	13	1	0	0	0	copy fasta	ZNF572	chr8	124968295	124984389