JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C16orf87_chr16_46791603_46836180	1/1	a0001	154	264	84	60	76	10	32	copy fasta	C16orf87	chr16	46791603	46836180
C16orf89_chr16_5039122_5070956	1/1	a0001	361	307	88	40	131	12	34	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	a0002	361	106	4	36	49	6	11	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	a0003	148	10	0	1	9	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	a0004	361	3	3	0	0	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	a0005	130	1	0	0	1	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	a0006	361	1	1	0	0	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	a0007	361	1	0	0	1	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	a0008	361	1	0	1	0	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	a0009	301	1	0	0	0	0	1	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	a0010	361	1	0	0	1	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf90_chr16_3488484_3500489	1/1	a0001	182	424	92	74	198	14	44	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	a0002	182	14	4	1	9	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	a0003	182	3	0	0	3	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	a0004	182	1	0	0	0	0	1	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	a0005	182	1	0	1	0	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	a0006	182	1	0	0	1	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	a0007	182	1	0	0	1	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	a0008	182	1	0	0	0	0	1	copy fasta	C16orf90	chr16	3488484	3500489
C16orf92_chr16_30018198_30029704	1/1	a0001	110	352	82	72	146	14	36	copy fasta	C16orf92	chr16	30018198	30029704
C16orf95_chr16_87297814_87322392	1/1	a0001	239	242	69	49	90	11	21	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	a0002	239	208	26	35	117	7	23	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	a0003	239	1	1	0	0	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	a0004	239	1	0	0	0	0	1	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	a0005	239	1	1	0	0	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	a0006	239	1	1	0	0	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	a0007	239	1	0	0	1	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	a0008	239	1	0	0	0	0	1	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	a0009	239	1	0	0	1	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf95_chr16_87297814_87322392	0/0	a0010	239	1	0	0	1	0	0	copy fasta	C16orf95	chr16	87297814	87322392
C16orf96_chr16_4551340_4605758	1/0	a0001	1141	151	40	40	47	10	13	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0002	1141	35	5	2	22	2	4	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0003	1141	25	0	8	13	0	4	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/1	a0004	1140	16	13	0	1	1	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0005	1141	9	9	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0006	1140	6	6	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0007	1141	3	3	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0008	1141	3	3	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0009	1141	2	2	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0010	1141	2	2	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0011	1141	2	0	0	0	0	2	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0012	1141	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0013	1121	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0014	1090	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0015	1141	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0016	1121	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0017	422	1	0	0	1	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0018	1141	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0019	1120	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0020	1120	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758