Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF577_chr19_51862048_51892951	0/0	a0015	261	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0016	485	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0017	485	1	0	1	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0018	485	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0019	485	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0020	485	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0021	485	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	a0022	485	1	1	0	0	0	0	copy fasta	ZNF577	chr19	51862048	51892951
ZNF578_chr19_52448553_52521882	0/0	a0001	590	127	11	26	75	1	14	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/1	a0002	590	125	52	23	27	5	17	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	1/0	a0003	590	77	0	20	42	4	10	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0004	590	18	15	3	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0005	590	9	9	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0006	562	2	0	0	2	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0007	590	2	2	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0008	590	2	0	0	2	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0009	590	2	2	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0010	590	1	1	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0011	590	1	0	0	0	0	1	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0012	590	1	0	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0013	590	1	1	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0014	590	1	0	1	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0015	590	1	1	0	0	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0016	590	1	0	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF578_chr19_52448553_52521882	0/0	a0017	21	1	0	0	1	0	0	copy fasta	ZNF578	chr19	52448553	52521882
ZNF579_chr19_55571774_55585848	1/0	a0001	562	104	8	16	64	7	8	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0002	563	93	45	18	25	0	5	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/1	a0003	563	56	17	18	5	2	13	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0004	507	45	3	8	29	2	3	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0005	508	35	18	8	6	0	3	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0006	508	22	1	10	4	1	6	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0007	492	7	1	0	5	0	1	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0008	562	7	1	3	3	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0009	562	6	0	0	6	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0010	508	4	0	1	2	0	1	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0011	508	4	1	1	1	0	1	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0012	491	4	0	1	3	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0013	507	4	0	0	4	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0014	507	3	0	1	1	0	1	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0015	507	2	0	0	0	0	2	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0016	491	2	0	0	1	1	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0017	507	2	0	1	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0018	507	2	0	1	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0019	562	1	0	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0020	563	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0021	508	1	0	0	0	1	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0022	508	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0023	492	1	0	0	1	0	0	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0024	507	1	0	0	0	0	1	copy fasta	ZNF579	chr19	55571774	55585848
ZNF579_chr19_55571774_55585848	0/0	a0025	492	1	1	0	0	0	0	copy fasta	ZNF579	chr19	55571774	55585848