Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF585A_chr19_37140540_37177695	0/0	a0006	769	2	0	1	0	1	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	a0007	769	1	0	0	1	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	a0008	769	1	1	0	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585A_chr19_37140540_37177695	0/0	a0009	769	1	0	1	0	0	0	copy fasta	ZNF585A	chr19	37140540	37177695
ZNF585B_chr19_37176579_37215536	1/0	a0001	769	246	51	38	118	10	28	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/1	a0002	769	83	23	27	22	3	7	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	a0003	769	6	6	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	a0004	769	3	3	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	a0005	769	3	0	0	1	1	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	a0006	769	2	2	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	a0007	769	1	0	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	a0008	769	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	a0009	769	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	a0010	769	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	a0011	769	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	a0012	769	1	0	0	0	0	1	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	a0013	769	1	0	0	1	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	a0014	769	1	1	0	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF585B_chr19_37176579_37215536	0/0	a0015	769	1	0	1	0	0	0	copy fasta	ZNF585B	chr19	37176579	37215536
ZNF586_chr19_57764676_57785616	1/1	a0001	402	394	78	80	174	16	44	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	a0002	402	14	14	0	0	0	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	a0003	77	1	0	1	0	0	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF586_chr19_57764676_57785616	0/0	a0004	402	1	0	1	0	0	0	copy fasta	ZNF586	chr19	57764676	57785616
ZNF587B_chr19_57825299_57851238	0/1	a0001	633	352	88	60	161	12	30	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	a0002	633	45	0	4	29	1	11	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	1/0	a0003	633	14	0	7	1	0	5	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	a0004	633	8	0	7	0	1	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	a0005	633	4	4	0	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	a0006	633	2	0	0	0	2	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	a0007	633	2	0	0	2	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	a0008	633	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	a0009	633	1	0	1	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	a0010	633	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	a0011	633	1	0	1	0	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587B_chr19_57825299_57851238	0/0	a0012	633	1	0	0	1	0	0	copy fasta	ZNF587B	chr19	57825299	57851238
ZNF587_chr19_57844859_57870117	1/0	a0001	575	202	28	42	94	9	28	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/1	a0002	575	179	18	35	107	5	13	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0003	575	22	21	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0004	575	17	6	0	11	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0005	575	12	12	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0006	575	6	0	4	1	0	1	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0007	575	2	2	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0008	575	2	1	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0009	575	2	2	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0010	575	2	1	0	0	1	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0011	575	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0012	575	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0013	575	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0014	575	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0015	575	1	1	0	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117