Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF587_chr19_57844859_57870117	0/0	a0016	575	1	0	0	0	1	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0017	302	1	0	1	0	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF587_chr19_57844859_57870117	0/0	a0018	575	1	0	0	1	0	0	copy fasta	ZNF587	chr19	57844859	57870117
ZNF589_chr3_48236104_48275990	1/0	a0001	364	220	51	45	93	8	22	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/1	a0002	364	75	20	16	28	2	8	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	a0003	364	7	4	2	1	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	a0004	254	1	1	0	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF589_chr3_48236104_48275990	0/0	a0005	364	1	0	1	0	0	0	copy fasta	ZNF589	chr3	48236104	48275990
ZNF592_chr15_84743592_84811445	1/0	a0001	1267	236	63	46	96	9	21	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/1	a0002	1267	116	25	16	56	7	11	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	a0003	1267	5	2	1	2	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	a0004	1267	3	0	0	3	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	a0005	1267	2	2	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	a0006	1267	1	0	1	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	a0007	1267	1	1	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	a0008	1267	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	a0009	1267	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	a0010	1267	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	a0011	1267	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	a0012	1267	1	1	0	0	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF592_chr15_84743592_84811445	0/0	a0013	1267	1	0	0	1	0	0	copy fasta	ZNF592	chr15	84743592	84811445
ZNF593OS_chr1_26164521_26176832	1/1	a0001	63	366	92	78	138	14	42	copy fasta	ZNF593OS	chr1	26164521	26176832
ZNF593_chr1_26164908_26175873	1/1	a0001	134	371	89	77	147	14	42	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	a0002	134	2	1	1	0	0	0	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	a0003	134	1	1	0	0	0	0	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	a0004	134	1	0	0	1	0	0	copy fasta	ZNF593	chr1	26164908	26175873
ZNF593_chr1_26164908_26175873	0/0	a0005	134	1	1	0	0	0	0	copy fasta	ZNF593	chr1	26164908	26175873
ZNF594_chr17_5174535_5196868	1/1	a0001	807	274	30	34	175	8	25	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0002	807	80	15	34	13	6	12	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0003	806	14	13	1	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0004	806	11	10	1	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0005	807	5	5	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0006	807	4	4	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0007	614	3	3	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0008	807	2	0	2	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0009	806	2	2	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0010	806	2	2	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0011	807	2	0	0	2	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0012	807	2	0	0	0	0	2	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0013	806	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0014	807	1	0	0	0	0	1	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0015	683	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0016	807	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0017	807	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0018	807	1	0	0	0	0	1	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0019	807	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0020	807	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0021	807	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0022	807	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0023	807	1	0	1	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868