Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF594_chr17_5174535_5196868	0/0	a0024	807	1	0	0	1	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0025	807	1	1	0	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0026	807	1	0	0	0	0	1	copy fasta	ZNF594	chr17	5174535	5196868
ZNF594_chr17_5174535_5196868	0/0	a0027	807	1	0	1	0	0	0	copy fasta	ZNF594	chr17	5174535	5196868
ZNF595_chr4_48321_93208	1/1	a0001	648	202	44	44	80	7	25	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	a0002	648	85	23	19	27	3	13	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	a0003	648	6	6	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	a0004	648	5	0	4	1	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	a0005	648	3	3	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	a0006	648	2	2	0	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	a0007	648	2	0	0	2	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	a0008	648	1	0	0	1	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	a0009	648	1	0	0	1	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF595_chr4_48321_93208	0/0	a0010	648	1	0	1	0	0	0	copy fasta	ZNF595	chr4	48321	93208
ZNF596_chr8_227456_252339	1/1	a0001	504	297	60	63	128	12	32	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	a0002	504	52	2	10	32	1	7	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	a0003	504	50	6	1	40	0	3	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	a0004	504	33	23	4	0	1	5	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	a0005	504	3	3	0	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	a0006	504	2	0	1	0	1	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	a0007	504	1	0	0	0	0	1	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	a0008	211	1	0	0	1	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	a0009	504	1	0	1	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	a0010	504	1	0	0	0	1	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	a0011	504	1	0	0	1	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	a0012	504	1	0	1	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF596_chr8_227456_252339	0/0	a0013	504	1	0	1	0	0	0	copy fasta	ZNF596	chr8	227456	252339
ZNF597_chr16_3427414_3448504	1/1	a0001	424	384	100	76	154	16	36	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	a0002	424	16	0	0	12	0	4	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	a0003	424	4	0	0	4	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	a0004	424	3	0	0	3	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	a0005	424	1	0	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	a0006	424	1	0	0	1	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	a0007	424	1	0	1	0	0	0	copy fasta	ZNF597	chr16	3427414	3448504
ZNF599_chr19_34753073_34778215	1/1	a0001	588	396	56	64	216	18	40	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	a0002	588	9	8	1	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	a0003	588	9	8	1	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	a0004	588	5	5	0	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	a0005	588	2	2	0	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	a0006	588	2	2	0	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	a0007	588	2	0	2	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	a0008	588	1	1	0	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	a0009	588	1	0	0	1	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	a0010	588	1	0	1	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	a0011	503	1	0	1	0	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	a0012	588	1	0	0	1	0	0	copy fasta	ZNF599	chr19	34753073	34778215
ZNF600_chr19_52759184_52791791	0/1	a0001	791	230	32	57	103	10	27	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	1/0	a0002	791	118	0	13	88	4	12	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0003	791	66	32	7	15	2	10	copy fasta	ZNF600	chr19	52759184	52791791
ZNF600_chr19_52759184_52791791	0/0	a0004	791	14	0	0	14	0	0	copy fasta	ZNF600	chr19	52759184	52791791