Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF615_chr19_51986332_52013211	0/0	a0004	742	6	5	1	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	a0005	742	2	2	0	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	a0006	742	1	1	0	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	a0007	742	1	0	0	1	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	a0008	742	1	0	0	1	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	a0009	742	1	0	0	0	0	1	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	a0010	742	1	0	0	1	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	a0011	742	1	0	0	1	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	a0012	742	1	0	0	1	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF615_chr19_51986332_52013211	0/0	a0013	742	1	1	0	0	0	0	copy fasta	ZNF615	chr19	51986332	52013211
ZNF616_chr19_52108091_52144938	1/1	a0001	781	226	19	38	123	14	30	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	a0002	781	125	54	21	36	2	12	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	a0003	781	37	1	13	20	1	2	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	a0004	781	11	10	1	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	a0005	781	3	3	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	a0006	781	3	3	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	a0007	781	2	0	1	0	1	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	a0008	781	2	2	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	a0009	781	1	0	0	0	0	1	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	a0010	781	1	1	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	a0011	781	1	0	0	0	0	1	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	a0012	781	1	1	0	0	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF616_chr19_52108091_52144938	0/0	a0013	781	1	0	0	1	0	0	copy fasta	ZNF616	chr19	52108091	52144938
ZNF618_chr9_113871309_114061593	1/1	a0001	954	262	79	49	104	12	16	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	a0002	954	1	0	1	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF618_chr9_113871309_114061593	0/0	a0003	954	1	1	0	0	0	0	copy fasta	ZNF618	chr9	113871309	114061593
ZNF619_chr3_40472122_40496053	1/1	a0001	576	390	80	61	191	15	41	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	a0002	576	24	14	4	4	1	1	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	a0003	576	2	0	0	0	0	2	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	a0004	576	1	0	0	1	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	a0005	576	1	0	0	1	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	a0006	576	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	a0007	576	1	1	0	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	a0008	576	1	0	1	0	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF619_chr3_40472122_40496053	0/0	a0009	576	1	0	0	1	0	0	copy fasta	ZNF619	chr3	40472122	40496053
ZNF620_chr3_40501039_40523736	1/1	a0001	422	328	78	54	151	12	31	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	a0002	422	46	8	8	25	1	4	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	a0003	422	29	2	2	19	1	5	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	a0004	422	2	0	2	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	a0005	422	1	0	1	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	a0006	422	1	0	1	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	a0007	422	1	0	0	1	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	a0008	422	1	1	0	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF620_chr3_40501039_40523736	0/0	a0009	422	1	1	0	0	0	0	copy fasta	ZNF620	chr3	40501039	40523736
ZNF621_chr3_40519960_40544782	1/1	a0001	439	387	96	73	162	16	38	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	a0002	439	11	0	1	8	0	2	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	a0003	439	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	a0004	439	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	a0005	439	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782
ZNF621_chr3_40519960_40544782	0/0	a0006	439	1	0	0	1	0	0	copy fasta	ZNF621	chr3	40519960	40544782