JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C16orf96_chr16_4551340_4605758	0/0	a0021	552	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0022	651	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0023	1140	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0024	1141	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0025	1141	1	0	0	0	1	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0026	1141	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0027	1141	1	0	0	1	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0028	1141	1	0	0	0	0	1	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0029	1140	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0030	1141	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0031	973	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0032	1141	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0033	1141	1	0	0	1	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0034	1141	1	0	1	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C16orf96_chr16_4551340_4605758	0/0	a0035	1141	1	1	0	0	0	0	copy fasta	C16orf96	chr16	4551340	4605758
C17orf100_chr17_6646762_6658476	1/1	a0001	118	433	92	77	204	16	42	copy fasta	C17orf100	chr17	6646762	6658476
C17orf100_chr17_6646762_6658476	0/0	a0002	118	1	0	1	0	0	0	copy fasta	C17orf100	chr17	6646762	6658476
C17orf107_chr17_4894536_4907934	1/1	a0001	190	332	62	52	166	11	39	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	a0002	151	89	29	22	30	3	5	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	a0003	73	14	0	0	14	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	a0004	151	5	5	0	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf107_chr17_4894536_4907934	0/0	a0005	190	2	0	2	0	0	0	copy fasta	C17orf107	chr17	4894536	4907934
C17orf113_chr17_42033232_42055601	1/1	a0001	675	288	84	48	117	12	25	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	a0002	675	2	2	0	0	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	a0003	675	2	0	0	0	0	2	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	a0004	675	2	0	0	2	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	a0005	675	1	0	0	1	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	a0006	675	1	0	0	1	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	a0007	675	1	0	0	0	0	1	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	a0008	675	1	1	0	0	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	a0009	675	1	1	0	0	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf113_chr17_42033232_42055601	0/0	a0010	675	1	0	0	1	0	0	copy fasta	C17orf113	chr17	42033232	42055601
C17orf114_chr17_4796159_4807328	1/1	a0001	79	362	88	64	158	9	41	copy fasta	C17orf114	chr17	4796159	4807328
C17orf114_chr17_4796159_4807328	0/0	a0002	79	62	3	10	39	5	5	copy fasta	C17orf114	chr17	4796159	4807328
C17orf114_chr17_4796159_4807328	0/0	a0003	10	1	0	0	1	0	0	copy fasta	C17orf114	chr17	4796159	4807328
C17orf114_chr17_4796159_4807328	0/0	a0004	79	1	1	0	0	0	0	copy fasta	C17orf114	chr17	4796159	4807328
C17orf49_chr17_7009782_7022520	1/1	a0001	172	382	90	70	166	16	38	copy fasta	C17orf49	chr17	7009782	7022520
C17orf50_chr17_35755887_35770079	1/1	a0001	174	253	41	53	114	12	31	copy fasta	C17orf50	chr17	35755887	35770079
C17orf50_chr17_35755887_35770079	0/0	a0002	174	140	48	23	53	2	14	copy fasta	C17orf50	chr17	35755887	35770079
C17orf50_chr17_35755887_35770079	0/0	a0003	165	6	0	0	6	0	0	copy fasta	C17orf50	chr17	35755887	35770079
C17orf50_chr17_35755887_35770079	0/0	a0004	174	5	5	0	0	0	0	copy fasta	C17orf50	chr17	35755887	35770079
C17orf50_chr17_35755887_35770079	0/0	a0005	174	2	2	0	0	0	0	copy fasta	C17orf50	chr17	35755887	35770079
C17orf50_chr17_35755887_35770079	0/0	a0006	174	1	0	0	1	0	0	copy fasta	C17orf50	chr17	35755887	35770079
C17orf50_chr17_35755887_35770079	0/0	a0007	174	1	0	0	0	0	1	copy fasta	C17orf50	chr17	35755887	35770079
C17orf58_chr17_67986099_68001469	0/1	a0001	339	175	38	50	52	15	19	copy fasta	C17orf58	chr17	67986099	68001469
C17orf58_chr17_67986099_68001469	0/0	a0002	339	148	6	17	114	3	8	copy fasta	C17orf58	chr17	67986099	68001469
C17orf58_chr17_67986099_68001469	1/0	a0003	339	63	50	6	5	0	1	copy fasta	C17orf58	chr17	67986099	68001469
C17orf58_chr17_67986099_68001469	0/0	a0004	339	23	1	7	7	0	8	copy fasta	C17orf58	chr17	67986099	68001469
C17orf58_chr17_67986099_68001469	0/0	a0005	339	1	1	0	0	0	0	copy fasta	C17orf58	chr17	67986099	68001469
C17orf58_chr17_67986099_68001469	0/0	a0006	339	1	1	0	0	0	0	copy fasta	C17orf58	chr17	67986099	68001469