Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF638_chr2_71326782_71440061	0/0	a0012	1978	1	0	0	1	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0013	1978	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0014	1978	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0015	1978	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0016	1978	1	0	0	1	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0017	1978	1	0	1	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0018	1978	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0019	1978	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0020	1978	1	0	0	1	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF638_chr2_71326782_71440061	0/0	a0021	1978	1	1	0	0	0	0	copy fasta	ZNF638	chr2	71326782	71440061
ZNF639_chr3_179318031_179343583	1/1	a0001	485	405	91	76	183	14	39	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	a0002	485	6	0	0	1	0	5	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	a0003	485	1	0	1	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	a0004	485	1	1	0	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF639_chr3_179318031_179343583	0/0	a0005	485	1	0	1	0	0	0	copy fasta	ZNF639	chr3	179318031	179343583
ZNF641_chr12_48332180_48355919	1/1	a0001	424	375	87	63	184	11	28	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	a0002	424	29	2	12	1	3	11	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	a0003	424	1	0	0	0	0	1	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	a0004	424	1	0	0	1	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	a0005	424	1	1	0	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF641_chr12_48332180_48355919	0/0	a0006	424	1	0	1	0	0	0	copy fasta	ZNF641	chr12	48332180	48355919
ZNF644_chr1_90910304_91027035	1/1	a0001	1327	297	66	61	123	12	33	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	a0002	1327	5	5	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	a0003	1327	5	0	2	0	2	1	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	a0004	1327	2	2	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	a0005	1327	1	1	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	a0006	1327	1	1	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	a0007	1327	1	0	1	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	a0008	1327	1	1	0	0	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF644_chr1_90910304_91027035	0/0	a0009	1327	1	0	0	1	0	0	copy fasta	ZNF644	chr1	90910304	91027035
ZNF646_chr16_31069422_31089196	0/0	a0001	1832	119	2	28	81	4	4	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0002	1832	89	14	19	25	5	26	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	1/1	a0003	1832	44	21	10	0	6	5	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0004	1832	31	29	2	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0005	1832	4	3	1	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0006	1832	4	4	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0007	1832	3	0	0	3	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0008	1832	3	0	2	0	1	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0009	1832	2	0	2	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0010	1832	2	2	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0011	1832	2	2	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0012	1832	2	0	2	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0013	1832	2	0	2	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0014	1832	2	2	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0015	1832	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0016	1832	1	0	1	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0017	1832	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0018	1832	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0019	1832	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0020	1832	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196