Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF646_chr16_31069422_31089196	0/0	a0021	1832	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0022	1832	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0023	1832	1	1	0	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0024	1832	1	0	0	0	1	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0025	1832	1	0	0	0	1	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0026	1832	1	0	0	0	0	1	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0027	1832	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0028	1832	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0029	1832	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0030	1832	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0031	1832	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0032	1832	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0033	1832	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0034	1832	1	0	1	0	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	a0035	1832	1	0	0	1	0	0	copy fasta	ZNF646	chr16	31069422	31089196
ZNF648_chr1_182049570_182066712	1/0	a0001	568	264	76	54	101	5	27	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/1	a0002	568	91	6	9	63	3	9	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	a0003	568	2	2	0	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	a0004	568	1	0	1	0	0	0	copy fasta	ZNF648	chr1	182049570	182066712
ZNF649_chr19_51884235_51910017	1/1	a0001	505	344	84	64	142	16	36	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	a0002	505	29	5	9	10	0	5	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	a0003	505	3	0	3	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	a0004	505	1	1	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	a0005	505	1	1	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	a0006	505	1	0	0	0	0	1	copy fasta	ZNF649	chr19	51884235	51910017
ZNF649_chr19_51884235_51910017	0/0	a0007	505	1	1	0	0	0	0	copy fasta	ZNF649	chr19	51884235	51910017
ZNF652_chr17_49284206_49367250	1/1	a0001	606	373	77	69	174	18	33	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	a0002	606	5	5	0	0	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	a0003	606	2	2	0	0	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	a0004	606	1	0	0	0	0	1	copy fasta	ZNF652	chr17	49284206	49367250
ZNF652_chr17_49284206_49367250	0/0	a0005	606	1	0	1	0	0	0	copy fasta	ZNF652	chr17	49284206	49367250
ZNF653_chr19_11478429_11510839	1/1	a0001	615	309	89	61	104	12	41	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	a0002	615	10	0	0	10	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	a0003	615	5	4	1	0	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	a0004	612	3	3	0	0	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	a0005	615	3	0	2	0	0	1	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	a0006	615	1	1	0	0	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF653_chr19_11478429_11510839	0/0	a0007	615	1	1	0	0	0	0	copy fasta	ZNF653	chr19	11478429	11510839
ZNF654_chr3_88054255_88149660	0/1	a0001	1128	117	39	22	45	3	7	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	1/0	a0002	1128	77	26	14	27	2	7	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	a0003	1128	9	0	9	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	a0004	1128	8	8	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	a0005	1128	4	4	0	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	a0006	1128	2	1	1	0	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	a0007	1128	1	0	0	1	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	a0008	1128	1	0	0	1	0	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF654_chr3_88054255_88149660	0/0	a0009	1128	1	0	0	0	1	0	copy fasta	ZNF654	chr3	88054255	88149660
ZNF655_chr7_99553642_99581453	1/1	a0001	491	360	86	62	151	16	43	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	a0002	491	5	5	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	a0003	491	1	0	0	0	0	1	copy fasta	ZNF655	chr7	99553642	99581453