Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF655_chr7_99553642_99581453	0/0	a0004	491	1	1	0	0	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF655_chr7_99553642_99581453	0/0	a0005	491	1	0	0	1	0	0	copy fasta	ZNF655	chr7	99553642	99581453
ZNF658_chr9_66895725_66926426	1/1	a0001	1059	361	66	72	159	16	46	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	a0002	1058	25	0	1	24	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	a0003	1059	16	9	1	6	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	a0004	1059	7	1	1	3	0	2	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	a0005	1059	4	4	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	a0006	1059	2	0	2	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	a0007	1059	2	2	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	a0008	1059	2	2	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	a0009	1059	1	1	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	a0010	1059	1	0	1	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	a0011	1059	1	0	1	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	a0012	1059	1	1	0	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF658_chr9_66895725_66926426	0/0	a0013	1059	1	0	1	0	0	0	copy fasta	ZNF658	chr9	66895725	66926426
ZNF660_chr3_44579964_44604694	1/1	a0001	331	302	98	74	84	16	28	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	a0002	331	2	0	0	2	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	a0003	331	1	0	0	1	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	a0004	331	1	0	0	1	0	0	copy fasta	ZNF660	chr3	44579964	44604694
ZNF662_chr3_42901142_42924334	1/1	a0001	426	360	93	71	133	14	47	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	a0002	426	14	0	0	14	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	a0003	426	1	0	0	1	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	a0004	426	1	0	1	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	a0005	426	1	0	0	0	0	1	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	a0006	426	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	a0007	426	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	a0008	426	1	0	0	1	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	a0009	426	1	1	0	0	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	a0010	426	1	0	0	1	0	0	copy fasta	ZNF662	chr3	42901142	42924334
ZNF664_chr12_123968215_124020427	1/1	a0001	261	290	86	58	96	12	36	copy fasta	ZNF664	chr12	123968215	124020427
ZNF665_chr19_53157424_53198358	0/0	a0001	678	198	14	35	109	9	31	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/1	a0002	678	141	57	24	46	6	7	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	1/0	a0003	678	40	12	8	18	0	1	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0004	678	8	0	6	0	1	1	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0005	678	3	0	0	3	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0006	678	3	3	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0007	678	2	0	0	0	0	2	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0008	153	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0009	678	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0010	678	2	2	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0011	92	1	0	1	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0012	678	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0013	117	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0014	678	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0015	678	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0016	678	1	1	0	0	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF665_chr19_53157424_53198358	0/0	a0017	678	1	0	0	1	0	0	copy fasta	ZNF665	chr19	53157424	53198358
ZNF667_chr19_56434329_56482345	0/1	a0001	610	255	58	47	118	6	25	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	a0002	610	85	19	26	21	4	15	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	1/0	a0003	610	19	16	0	0	2	0	copy fasta	ZNF667	chr19	56434329	56482345