Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF667_chr19_56434329_56482345	0/0	a0004	610	1	0	1	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	a0005	610	1	1	0	0	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF667_chr19_56434329_56482345	0/0	a0006	610	1	0	0	1	0	0	copy fasta	ZNF667	chr19	56434329	56482345
ZNF668_chr16_31055847_31079240	1/0	a0001	619	267	79	60	87	11	29	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/1	a0002	619	23	2	10	0	5	5	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	a0003	619	5	5	0	0	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	a0004	619	1	0	0	1	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	a0005	619	1	1	0	0	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	a0006	619	1	1	0	0	0	0	copy fasta	ZNF668	chr16	31055847	31079240
ZNF669_chr1_247094962_247109356	1/1	a0001	378	385	86	79	158	16	44	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	a0002	378	3	2	1	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	a0003	378	2	2	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	a0004	378	1	1	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	a0005	378	1	1	0	0	0	0	copy fasta	ZNF669	chr1	247094962	247109356
ZNF66_chr19_20771304_20814995	1/1	a0001	573	221	49	43	98	8	21	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0002	573	73	27	13	24	2	7	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0003	573	49	0	3	34	2	10	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0004	573	14	0	0	14	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0005	601	8	0	3	1	2	2	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0006	573	8	0	5	1	0	2	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0007	573	5	0	0	5	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0008	601	4	4	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0009	573	4	0	3	0	1	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0010	601	3	3	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0011	573	2	2	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0012	573	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0013	601	1	1	0	0	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0014	545	1	0	0	0	0	1	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0015	573	1	0	0	0	1	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0016	573	1	0	0	0	0	1	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0017	573	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF66_chr19_20771304_20814995	0/0	a0018	573	1	0	0	1	0	0	copy fasta	ZNF66	chr19	20771304	20814995
ZNF670_chr1_247029637_247083811	1/1	a0001	389	323	91	66	109	16	39	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	a0002	389	1	1	0	0	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	a0003	389	1	0	0	1	0	0	copy fasta	ZNF670	chr1	247029637	247083811
ZNF670_chr1_247029637_247083811	0/0	a0004	389	1	0	0	0	0	1	copy fasta	ZNF670	chr1	247029637	247083811
ZNF671_chr19_57714751_57732624	1/0	a0001	534	345	52	69	166	14	43	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/1	a0002	534	70	34	5	25	2	3	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	a0003	534	8	8	0	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	a0004	534	1	1	0	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	a0005	534	1	0	0	1	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF671_chr19_57714751_57732624	0/0	a0006	534	1	1	0	0	0	0	copy fasta	ZNF671	chr19	57714751	57732624
ZNF672_chr1_248833224_248854517	1/1	a0001	452	426	90	74	205	14	41	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	a0002	452	1	0	0	1	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	a0003	452	1	1	0	0	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	a0004	452	1	1	0	0	0	0	copy fasta	ZNF672	chr1	248833224	248854517
ZNF672_chr1_248833224_248854517	0/0	a0005	452	1	0	0	0	0	1	copy fasta	ZNF672	chr1	248833224	248854517
ZNF674_chrX_46492725_46550421	1/1	a0001	576	274	52	52	129	13	26	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	a0002	576	7	6	1	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	a0003	576	3	3	0	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421