Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF674_chrX_46492725_46550421	0/0	a0004	576	1	1	0	0	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	a0005	233	1	0	0	1	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF674_chrX_46492725_46550421	0/0	a0006	576	1	0	0	1	0	0	copy fasta	ZNF674	chrX	46492725	46550421
ZNF675_chr19_23647801_23692212	0/0	a0001	568	247	39	38	142	5	23	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/1	a0002	568	104	32	19	33	4	15	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	1/0	a0003	568	14	12	1	0	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	a0004	568	3	0	0	3	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	a0005	568	2	2	0	0	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	a0006	568	2	2	0	0	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	a0007	540	1	1	0	0	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	a0008	568	1	0	0	0	1	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	a0009	568	1	0	0	1	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF675_chr19_23647801_23692212	0/0	a0010	568	1	0	0	1	0	0	copy fasta	ZNF675	chr19	23647801	23692212
ZNF676_chr19_22174089_22201951	0/0	a0001	672	224	27	26	135	10	26	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0002	672	156	46	27	65	2	16	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/1	a0003	672	24	3	13	4	2	1	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0004	672	10	10	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0005	672	8	3	3	0	2	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0006	672	3	1	2	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0007	672	2	2	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0008	672	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0009	644	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0010	672	1	1	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0011	644	1	0	1	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0012	672	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0013	672	1	1	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0014	672	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0015	672	1	1	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0016	672	1	1	0	0	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0017	756	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0018	672	1	0	0	1	0	0	copy fasta	ZNF676	chr19	22174089	22201951
ZNF676_chr19_22174089_22201951	0/0	a0019	672	1	0	0	0	0	1	copy fasta	ZNF676	chr19	22174089	22201951
ZNF677_chr19_53230381_53259873	1/1	a0001	584	377	75	72	175	15	38	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	a0002	584	9	8	1	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	a0003	584	9	8	1	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	a0004	584	3	0	0	0	1	2	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	a0005	584	3	3	0	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	a0006	584	1	0	1	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	a0007	584	1	1	0	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	a0008	584	1	0	1	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	a0009	584	1	0	0	1	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF677_chr19_53230381_53259873	0/0	a0010	584	1	1	0	0	0	0	copy fasta	ZNF677	chr19	53230381	53259873
ZNF678_chr1_227558556_227667461	1/1	a0001	525	357	75	69	157	18	36	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	a0002	357	15	0	5	9	0	1	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	a0003	525	6	6	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	a0004	525	5	5	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	a0005	525	4	4	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	a0006	525	2	0	2	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	a0007	525	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	a0008	525	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461