Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF678_chr1_227558556_227667461	0/0	a0009	525	1	1	0	0	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	a0010	525	1	0	0	0	0	1	copy fasta	ZNF678	chr1	227558556	227667461
ZNF678_chr1_227558556_227667461	0/0	a0011	525	1	0	0	1	0	0	copy fasta	ZNF678	chr1	227558556	227667461
ZNF679_chr7_64223474_64271931	1/1	a0001	411	225	31	33	134	5	20	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	a0002	411	63	25	13	20	1	4	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	a0003	411	56	27	15	0	3	11	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	a0004	411	48	0	5	38	2	3	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	a0005	411	18	4	8	0	3	3	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	a0006	411	6	6	0	0	0	0	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	a0007	411	2	2	0	0	0	0	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	a0008	411	2	0	2	0	0	0	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	a0009	411	1	0	0	0	0	1	copy fasta	ZNF679	chr7	64223474	64271931
ZNF679_chr7_64223474_64271931	0/0	a0010	411	1	1	0	0	0	0	copy fasta	ZNF679	chr7	64223474	64271931
ZNF680_chr7_64514878_64568071	1/1	a0001	530	346	87	62	149	12	34	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	a0002	530	37	0	6	27	2	2	copy fasta	ZNF680	chr7	64514878	64568071
ZNF680_chr7_64514878_64568071	0/0	a0003	530	1	1	0	0	0	0	copy fasta	ZNF680	chr7	64514878	64568071
ZNF681_chr19_23734195_23763891	0/0	a0001	645	258	62	50	109	13	24	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	a0002	645	67	7	5	48	0	7	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/1	a0003	206	40	0	8	21	3	7	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	1/0	a0004	645	10	8	1	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	a0005	171	6	5	1	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	a0006	645	4	0	2	0	0	2	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	a0007	645	3	3	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	a0008	645	2	2	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	a0009	645	1	1	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	a0010	645	1	1	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	a0011	645	1	0	1	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF681_chr19_23734195_23763891	0/0	a0012	645	1	1	0	0	0	0	copy fasta	ZNF681	chr19	23734195	23763891
ZNF682_chr19_19999418_20044505	1/1	a0001	498	237	41	44	122	9	19	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	a0002	498	57	11	9	31	0	6	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	a0003	498	55	23	11	10	3	8	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	a0004	498	18	13	4	1	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	a0005	482	8	0	0	8	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	a0006	498	6	5	0	0	0	1	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	a0007	498	1	0	0	1	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	a0008	498	1	1	0	0	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	a0009	498	1	0	0	1	0	0	copy fasta	ZNF682	chr19	19999418	20044505
ZNF683_chr1_26356634_26377750	0/0	a0001	504	147	17	23	88	2	17	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	a0002	504	111	15	30	52	5	9	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	1/1	a0003	504	84	25	19	24	5	9	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	a0004	496	42	22	3	8	4	5	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	a0005	496	7	7	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	a0006	504	4	3	1	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	a0007	504	2	2	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	a0008	504	1	1	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	a0009	496	1	1	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	a0010	504	1	0	0	1	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	a0011	504	1	1	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	a0012	504	1	0	0	1	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	a0013	504	1	1	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750