Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF683_chr1_26356634_26377750	0/0	a0014	374	1	0	0	1	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	a0015	504	1	0	0	1	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	a0016	496	1	1	0	0	0	0	copy fasta	ZNF683	chr1	26356634	26377750
ZNF684_chr1_40526637_40553167	1/1	a0001	378	382	86	72	162	18	42	copy fasta	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	a0002	378	2	2	0	0	0	0	copy fasta	ZNF684	chr1	40526637	40553167
ZNF687_chr1_151277299_151297176	1/1	a0001	1237	303	71	52	132	11	35	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0002	1237	40	12	8	16	3	1	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0003	1237	11	1	7	0	0	3	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0004	1238	4	1	0	0	3	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0005	1237	3	0	0	0	1	2	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0006	1237	2	2	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0007	1237	2	2	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0008	1237	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0009	1237	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0010	1237	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0011	1237	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0012	1237	1	1	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0013	1237	1	0	0	0	0	1	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0014	1237	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0015	1237	1	1	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0016	1237	1	0	1	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0017	227	1	0	0	1	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF687_chr1_151277299_151297176	0/0	a0018	1237	1	1	0	0	0	0	copy fasta	ZNF687	chr1	151277299	151297176
ZNF688_chr16_30564726_30576714	1/1	a0001	276	290	85	51	105	18	29	copy fasta	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	a0002	276	6	4	1	0	0	1	copy fasta	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	a0003	276	3	0	0	3	0	0	copy fasta	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	a0004	276	1	1	0	0	0	0	copy fasta	ZNF688	chr16	30564726	30576714
ZNF689_chr16_30597558_30615389	1/1	a0001	500	334	92	71	123	14	32	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	a0002	500	1	0	1	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	a0003	500	1	0	0	1	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	a0004	500	1	0	1	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	a0005	500	1	0	1	0	0	0	copy fasta	ZNF689	chr16	30597558	30615389
ZNF691_chr1_42841613_42857477	1/0	a0001	315	442	98	68	219	14	42	copy fasta	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	a0002	315	1	0	0	1	0	0	copy fasta	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/1	a0003	315	1	0	0	0	0	0	copy fasta	ZNF691	chr1	42841613	42857477
ZNF692_chr1_248845008_248864085	1/1	a0001	519	320	62	50	158	17	31	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	a0002	519	83	29	12	36	1	5	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	a0003	519	4	0	0	4	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	a0004	519	1	0	0	1	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	a0005	519	1	0	1	0	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	a0006	519	1	1	0	0	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	a0007	519	1	0	1	0	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	a0008	519	1	0	0	1	0	0	copy fasta	ZNF692	chr1	248845008	248864085
ZNF695_chr1_246980323_247013057	0/0	a0001	515	122	11	39	42	8	22	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	a0002	515	40	22	11	0	2	5	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	1/0	a0003	515	19	3	3	2	1	9	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	a0004	515	17	13	3	0	0	1	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	a0005	515	13	11	2	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	a0006	515	12	10	1	0	0	1	copy fasta	ZNF695	chr1	246980323	247013057
ZNF695_chr1_246980323_247013057	0/0	a0007	515	11	10	1	0	0	0	copy fasta	ZNF695	chr1	246980323	247013057