JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C17orf58_chr17_67986099_68001469	0/0	a0007	339	1	1	0	0	0	0	copy fasta	C17orf58	chr17	67986099	68001469
C17orf67_chr17_56786913_56838920	1/1	a0001	90	244	72	51	81	9	29	copy fasta	C17orf67	chr17	56786913	56838920
C17orf67_chr17_56786913_56838920	0/0	a0002	90	47	17	9	9	3	9	copy fasta	C17orf67	chr17	56786913	56838920
C17orf67_chr17_56786913_56838920	0/0	a0003	90	1	1	0	0	0	0	copy fasta	C17orf67	chr17	56786913	56838920
C17orf75_chr17_32323441_32347173	1/1	a0001	396	364	89	70	147	12	44	copy fasta	C17orf75	chr17	32323441	32347173
C17orf75_chr17_32323441_32347173	0/0	a0002	396	1	1	0	0	0	0	copy fasta	C17orf75	chr17	32323441	32347173
C17orf75_chr17_32323441_32347173	0/0	a0003	396	1	0	0	1	0	0	copy fasta	C17orf75	chr17	32323441	32347173
C17orf78_chr17_37370985_37397708	0/1	a0001	275	245	66	60	72	14	32	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	a0002	275	178	27	21	112	2	16	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	a0003	275	13	0	0	13	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	a0004	275	2	0	0	2	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	a0005	275	1	0	1	0	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	a0006	275	1	1	0	0	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf78_chr17_37370985_37397708	0/0	a0007	275	1	0	0	1	0	0	copy fasta	C17orf78	chr17	37370985	37397708
C17orf80_chr17_73227433_73253959	0/1	a0001	609	175	43	34	71	3	23	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	a0002	609	175	32	30	89	6	18	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	a0003	609	13	11	2	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	a0004	609	5	0	2	0	0	3	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	a0005	609	4	4	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	1/0	a0006	609	3	2	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	a0007	609	2	0	0	2	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	a0008	609	2	0	2	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	a0009	609	2	2	0	0	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	a0010	39	1	0	0	1	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	a0011	609	1	0	0	1	0	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf80_chr17_73227433_73253959	0/0	a0012	609	1	0	0	0	1	0	copy fasta	C17orf80	chr17	73227433	73253959
C17orf98_chr17_38830086_38846438	0/1	a0001	154	381	81	70	180	12	37	copy fasta	C17orf98	chr17	38830086	38846438
C17orf98_chr17_38830086_38846438	0/0	a0002	154	45	13	9	17	1	5	copy fasta	C17orf98	chr17	38830086	38846438
C17orf98_chr17_38830086_38846438	0/0	a0003	154	4	0	1	0	3	0	copy fasta	C17orf98	chr17	38830086	38846438
C17orf98_chr17_38830086_38846438	0/0	a0004	154	1	0	0	1	0	0	copy fasta	C17orf98	chr17	38830086	38846438
C17orf99_chr17_78141385_78171297	0/1	a0001	265	300	78	69	112	5	35	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	1/0	a0002	265	95	5	13	60	7	9	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	a0003	265	31	5	2	22	0	2	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	a0004	265	11	11	0	0	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	a0005	265	4	0	0	0	2	2	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	a0006	265	1	0	0	1	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	a0007	265	1	1	0	0	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	a0008	265	1	0	0	1	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	a0009	265	1	0	1	0	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C17orf99_chr17_78141385_78171297	0/0	a0010	265	1	0	1	0	0	0	copy fasta	C17orf99	chr17	78141385	78171297
C18orf21_chr18_35967679_35984278	1/1	a0001	220	277	67	63	117	7	21	copy fasta	C18orf21	chr18	35967679	35984278
C18orf21_chr18_35967679_35984278	0/0	a0002	220	122	30	11	63	3	15	copy fasta	C18orf21	chr18	35967679	35984278
C18orf21_chr18_35967679_35984278	0/0	a0003	220	1	1	0	0	0	0	copy fasta	C18orf21	chr18	35967679	35984278
C18orf32_chr18_49472243_49492234	1/1	a0001	76	440	98	72	206	18	44	copy fasta	C18orf32	chr18	49472243	49492234
C18orf54_chr18_54352906_54387034	1/1	a0001	533	303	74	61	123	12	31	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	a0002	533	20	8	3	0	4	5	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	a0003	533	3	3	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	a0004	533	3	3	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	a0005	533	2	0	0	0	0	2	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	a0006	533	1	0	0	1	0	0	copy fasta	C18orf54	chr18	54352906	54387034