Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF711_chrX_85238991_85278357	0/0	a0005	807	1	0	0	1	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF711_chrX_85238991_85278357	0/0	a0006	807	1	0	0	1	0	0	copy fasta	ZNF711	chrX	85238991	85278357
ZNF713_chr7_55882456_55947225	1/1	a0001	443	408	96	66	189	15	40	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	a0002	443	1	0	0	1	0	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF713_chr7_55882456_55947225	0/0	a0003	443	1	0	0	0	1	0	copy fasta	ZNF713	chr7	55882456	55947225
ZNF714_chr19_21077203_21130094	0/1	a0001	555	162	17	38	69	11	26	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	a0002	554	62	21	5	30	2	4	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	1/0	a0003	555	57	41	11	0	2	2	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	a0004	554	2	2	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	a0005	555	2	2	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	a0006	554	1	0	0	1	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	a0007	554	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	a0008	555	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	a0009	555	1	0	0	0	1	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF714_chr19_21077203_21130094	0/0	a0010	555	1	1	0	0	0	0	copy fasta	ZNF714	chr19	21077203	21130094
ZNF716_chr7_57445177_57478559	1/1	a0001	495	232	49	40	107	6	28	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	a0002	495	175	38	28	89	4	16	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	a0003	495	4	4	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	a0004	495	3	0	0	3	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	a0005	495	3	0	3	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	a0006	495	2	0	0	2	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	a0007	495	1	0	1	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	a0008	495	1	0	0	1	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF716_chr7_57445177_57478559	0/0	a0009	495	1	1	0	0	0	0	copy fasta	ZNF716	chr7	57445177	57478559
ZNF717_chr3_75730868_75790549	0/1	a0001	911	118	8	28	62	5	14	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0002	914	65	4	16	36	6	3	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	1/0	a0003	914	50	11	9	21	1	7	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0004	914	35	19	7	3	0	6	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0005	914	24	0	0	23	0	1	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0006	911	19	12	3	0	2	2	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0007	911	16	15	1	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0008	911	14	14	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0009	914	3	3	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0010	911	3	3	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0011	914	2	2	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0012	914	1	0	0	1	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0013	911	1	0	0	0	0	1	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0014	911	1	1	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0015	911	1	1	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0016	911	1	0	0	0	0	1	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0017	911	1	0	0	0	0	1	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0018	911	1	1	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0019	911	1	0	1	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0020	914	1	1	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0021	914	1	0	1	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF717_chr3_75730868_75790549	0/0	a0022	914	1	1	0	0	0	0	copy fasta	ZNF717	chr3	75730868	75790549
ZNF718_chr4_119501_169162	0/1	a0001	16	162	33	30	74	5	19	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	a0002	478	75	0	22	36	5	12	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	1/0	a0003	478	42	17	7	6	2	9	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	a0004	478	16	10	2	4	0	0	copy fasta	ZNF718	chr4	119501	169162