Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF718_chr4_119501_169162	0/0	a0005	478	13	10	1	0	0	2	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	a0006	478	11	4	3	0	0	4	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	a0007	166	6	6	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	a0008	478	1	1	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	a0009	478	1	0	1	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	a0010	166	1	1	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	a0011	478	1	1	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF718_chr4_119501_169162	0/0	a0012	3	1	1	0	0	0	0	copy fasta	ZNF718	chr4	119501	169162
ZNF71_chr19_56590302_56629486	1/1	a0001	549	307	46	59	152	13	35	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	a0002	549	97	26	16	43	1	11	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	a0003	549	14	14	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	a0004	549	5	5	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	a0005	549	3	3	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	a0006	549	2	2	0	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	a0007	549	1	0	0	1	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	a0008	549	1	0	1	0	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	a0009	549	1	0	0	1	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF71_chr19_56590302_56629486	0/0	a0010	549	1	0	0	1	0	0	copy fasta	ZNF71	chr19	56590302	56629486
ZNF721_chr4_434988_504156	1/1	a0001	923	222	44	42	97	11	26	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0002	923	61	18	9	26	3	5	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0003	923	7	6	1	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0004	923	5	4	1	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0005	910	5	3	0	0	0	2	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0006	923	4	4	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0007	923	3	0	3	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0008	923	3	3	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0009	923	2	2	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0010	923	1	0	0	1	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0011	923	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0012	1231	1	0	0	1	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0013	895	1	0	0	1	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0014	923	1	0	0	1	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0015	923	1	0	1	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0016	1203	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0017	923	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0018	923	1	1	0	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0019	676	1	0	0	1	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0020	923	1	0	0	0	0	1	copy fasta	ZNF721	chr4	434988	504156
ZNF721_chr4_434988_504156	0/0	a0021	923	1	0	1	0	0	0	copy fasta	ZNF721	chr4	434988	504156
ZNF722_chr7_63993849_64023081	1/0	a0001	384	269	66	38	139	5	20	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/1	a0002	384	149	28	32	60	10	18	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	a0003	384	1	1	0	0	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	a0004	384	1	0	0	0	1	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	a0005	384	1	0	0	1	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF722_chr7_63993849_64023081	0/0	a0006	384	1	1	0	0	0	0	copy fasta	ZNF722	chr7	63993849	64023081
ZNF723_chr19_22827291_22863667	1/1	a0001	513	257	47	49	123	9	27	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	a0002	513	103	40	11	43	4	5	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	a0003	513	2	2	0	0	0	0	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	a0004	513	1	1	0	0	0	0	copy fasta	ZNF723	chr19	22827291	22863667
ZNF723_chr19_22827291_22863667	0/0	a0005	513	1	0	0	0	1	0	copy fasta	ZNF723	chr19	22827291	22863667