Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF724_chr19_23216599_23255394	1/1	a0001	619	312	90	52	124	14	30	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	a0002	619	7	1	6	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	a0003	619	2	0	0	2	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	a0004	619	1	0	0	1	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	a0005	596	1	0	0	1	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	a0006	619	1	0	0	1	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	a0007	619	1	0	0	1	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF724_chr19_23216599_23255394	0/0	a0008	619	1	1	0	0	0	0	copy fasta	ZNF724	chr19	23216599	23255394
ZNF726_chr19_23909886_23939484	1/1	a0001	616	391	87	61	182	15	44	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	a0002	616	5	0	5	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	a0003	555	4	4	0	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	a0004	560	4	2	2	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	a0005	616	3	0	3	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	a0006	588	2	2	0	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	a0007	616	2	0	2	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	a0008	616	1	0	1	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	a0009	616	1	0	0	1	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	a0010	616	1	0	0	1	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	a0011	616	1	0	0	0	1	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF726_chr19_23909886_23939484	0/0	a0012	616	1	1	0	0	0	0	copy fasta	ZNF726	chr19	23909886	23939484
ZNF727_chr7_64040434_64090339	0/1	a0001	499	179	36	45	67	8	22	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	1/0	a0002	499	141	31	21	71	6	11	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	a0003	499	56	2	8	45	0	1	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	a0004	1	9	8	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	a0005	499	7	7	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	a0006	499	6	6	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	a0007	499	4	4	0	0	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	a0008	498	4	0	0	4	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	a0009	499	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF727_chr7_64040434_64090339	0/0	a0010	499	1	0	0	1	0	0	copy fasta	ZNF727	chr7	64040434	64090339
ZNF728_chr19_22969883_23008176	1/1	a0001	622	226	46	43	99	8	28	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	a0002	622	52	30	7	12	2	1	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	a0003	622	36	7	6	20	0	3	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	a0004	622	2	0	0	0	0	2	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	a0005	622	2	2	0	0	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	a0006	622	2	2	0	0	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	a0007	734	1	0	0	0	0	1	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	a0008	455	1	0	0	1	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	a0009	650	1	0	0	0	0	1	copy fasta	ZNF728	chr19	22969883	23008176
ZNF728_chr19_22969883_23008176	0/0	a0010	622	1	1	0	0	0	0	copy fasta	ZNF728	chr19	22969883	23008176
ZNF729_chr19_22281441_22322176	1/1	a0001	1252	336	65	56	170	12	31	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0002	1252	13	0	4	7	0	2	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0003	1252	6	6	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0004	1252	6	5	1	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0005	1252	5	5	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0006	1252	3	3	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0007	1252	3	3	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0008	1252	2	0	0	0	0	2	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0009	1252	2	0	0	2	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0010	1252	2	0	2	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176