Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF729_chr19_22281441_22322176	0/0	a0011	1252	2	0	0	2	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0012	1054	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0013	1252	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0014	1252	1	0	0	1	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0015	1252	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0016	1252	1	0	0	1	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0017	1252	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0018	1252	1	0	0	1	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0019	1252	1	0	0	0	0	1	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0020	1252	1	0	1	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0021	1252	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0022	1252	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF729_chr19_22281441_22322176	0/0	a0023	1252	1	1	0	0	0	0	copy fasta	ZNF729	chr19	22281441	22322176
ZNF730_chr19_23112025_23152221	0/0	a0001	503	187	48	34	84	2	19	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	1/0	a0002	503	71	33	11	19	2	5	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	a0003	503	15	4	3	7	0	1	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	a0004	503	7	0	3	0	2	2	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/1	a0005	503	4	0	3	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	a0006	503	3	1	2	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	a0007	503	3	3	0	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	a0008	503	1	0	0	0	0	1	copy fasta	ZNF730	chr19	23112025	23152221
ZNF730_chr19_23112025_23152221	0/0	a0009	503	1	1	0	0	0	0	copy fasta	ZNF730	chr19	23112025	23152221
ZNF732_chr4_265675_310474	1/1	a0001	585	214	49	44	87	9	23	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	a0002	585	80	10	20	31	4	15	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	a0003	585	9	0	5	0	0	4	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	a0004	585	9	7	2	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	a0005	529	3	0	0	3	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	a0006	585	2	2	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	a0007	585	2	0	0	2	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	a0008	585	1	0	0	0	1	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	a0009	585	1	1	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	a0010	585	1	0	1	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	a0011	585	1	0	0	1	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	a0012	585	1	1	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	a0013	585	1	1	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF732_chr4_265675_310474	0/0	a0014	585	1	1	0	0	0	0	copy fasta	ZNF732	chr4	265675	310474
ZNF735_chr7_64202203_64225290	0/0	a0001	412	163	46	38	62	7	10	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	1/1	a0002	412	139	34	21	60	7	15	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	a0003	412	100	7	15	65	4	9	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	a0004	412	47	0	4	36	0	7	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	a0005	412	10	9	1	0	0	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	a0006	412	2	0	1	0	0	1	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	a0007	412	1	0	0	1	0	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	a0008	412	1	0	0	1	0	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	a0009	412	1	1	0	0	0	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	a0010	412	1	0	0	1	0	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF735_chr7_64202203_64225290	0/0	a0011	412	1	1	0	0	0	0	copy fasta	ZNF735	chr7	64202203	64225290
ZNF736_chr7_64308961_64361634	1/1	a0001	427	241	25	45	128	10	31	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	a0002	427	152	52	28	59	2	11	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	a0003	427	7	7	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634