Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF736_chr7_64308961_64361634	0/0	a0004	427	5	5	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	a0005	427	1	1	0	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	a0006	427	1	0	0	1	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF736_chr7_64308961_64361634	0/0	a0007	427	1	0	1	0	0	0	copy fasta	ZNF736	chr7	64308961	64361634
ZNF737_chr19_20532992_20570781	1/1	a0001	536	154	26	28	72	7	19	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0002	536	139	22	35	60	7	15	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0003	536	10	8	2	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0004	536	9	8	1	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0005	536	6	6	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0006	536	3	0	0	3	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0007	536	3	3	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0008	536	2	1	1	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0009	536	2	0	0	2	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0010	536	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0011	536	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0012	536	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0013	536	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0014	620	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0015	452	1	0	1	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0016	536	1	0	0	1	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF737_chr19_20532992_20570781	0/0	a0017	508	1	1	0	0	0	0	copy fasta	ZNF737	chr19	20532992	20570781
ZNF738_chr19_21354000_21393582	0/0	a0001	375	187	59	25	78	7	18	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	1/0	a0002	375	75	13	6	49	2	4	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	a0003	347	47	5	18	15	1	8	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/1	a0004	375	28	2	12	6	2	5	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	a0005	375	12	9	1	1	0	1	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	a0006	375	3	0	1	0	2	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	a0007	375	1	0	1	0	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF738_chr19_21354000_21393582	0/0	a0008	375	1	0	0	1	0	0	copy fasta	ZNF738	chr19	21354000	21393582
ZNF740_chr12_53175722_53200142	1/1	a0001	193	389	88	76	166	13	44	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	a0002	193	1	0	0	0	1	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	a0003	193	1	0	0	1	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF740_chr12_53175722_53200142	0/0	a0004	110	1	0	0	1	0	0	copy fasta	ZNF740	chr12	53175722	53200142
ZNF746_chr7_149467794_149502809	0/0	a0001	660	399	91	63	191	13	41	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	a0002	559	15	4	4	4	0	3	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	a0003	660	2	0	2	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	a0004	660	1	0	0	0	1	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	a0005	660	1	0	0	1	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	a0006	660	1	0	0	1	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	a0007	660	1	0	1	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	a0008	660	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	a0009	559	1	0	0	1	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	a0010	651	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF746_chr7_149467794_149502809	0/0	a0011	660	1	1	0	0	0	0	copy fasta	ZNF746	chr7	149467794	149502809
ZNF747_chr16_30525367_30539858	1/1	a0001	331	338	89	78	119	18	32	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	a0002	331	4	0	0	0	0	4	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	a0003	331	3	3	0	0	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	a0004	331	2	2	0	0	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	a0005	331	2	0	2	0	0	0	copy fasta	ZNF747	chr16	30525367	30539858
ZNF747_chr16_30525367_30539858	0/0	a0006	331	1	0	0	1	0	0	copy fasta	ZNF747	chr16	30525367	30539858