Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF765_chr19_53390149_53417009	0/0	a0006	523	1	0	1	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	a0007	523	1	0	1	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	a0008	523	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	a0009	523	1	0	1	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF765_chr19_53390149_53417009	0/0	a0010	523	1	1	0	0	0	0	copy fasta	ZNF765	chr19	53390149	53417009
ZNF766_chr19_52264587_52301046	0/0	a0001	468	367	61	71	176	14	45	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	a0002	468	40	32	8	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	a0003	468	5	0	0	4	0	1	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	a0004	468	1	0	1	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF766_chr19_52264587_52301046	0/0	a0005	468	1	1	0	0	0	0	copy fasta	ZNF766	chr19	52264587	52301046
ZNF768_chr16_30519004_30531566	1/0	a0001	540	251	44	54	111	11	30	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/1	a0002	540	82	47	21	1	7	5	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	a0003	540	4	0	0	4	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	a0004	540	3	0	0	0	0	3	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	a0005	540	1	0	0	1	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	a0006	540	1	0	1	0	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	a0007	540	1	0	0	1	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF768_chr16_30519004_30531566	0/0	a0008	540	1	1	0	0	0	0	copy fasta	ZNF768	chr16	30519004	30531566
ZNF76_chr6_35254735_35300985	1/1	a0001	570	266	52	50	137	5	20	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	a0002	570	27	23	2	2	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	a0003	570	5	3	2	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	a0004	570	3	3	0	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	a0005	570	1	1	0	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	a0006	570	1	1	0	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	a0007	570	1	0	0	1	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	a0008	570	1	0	0	0	1	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	a0009	570	1	0	1	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	a0010	570	1	1	0	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	a0011	456	1	0	0	1	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	a0012	570	1	0	0	1	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF76_chr6_35254735_35300985	0/0	a0013	570	1	0	1	0	0	0	copy fasta	ZNF76	chr6	35254735	35300985
ZNF770_chr15_34973341_34993287	1/1	a0001	691	384	85	66	176	16	39	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	a0002	691	6	6	0	0	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	a0003	691	1	1	0	0	0	0	copy fasta	ZNF770	chr15	34973341	34993287
ZNF770_chr15_34973341_34993287	0/0	a0004	691	1	0	0	0	0	1	copy fasta	ZNF770	chr15	34973341	34993287
ZNF771_chr16_30402606_30424414	1/1	a0001	317	324	78	74	110	14	46	copy fasta	ZNF771	chr16	30402606	30424414
ZNF771_chr16_30402606_30424414	0/0	a0002	317	2	0	0	2	0	0	copy fasta	ZNF771	chr16	30402606	30424414
ZNF771_chr16_30402606_30424414	0/0	a0003	317	1	0	0	1	0	0	copy fasta	ZNF771	chr16	30402606	30424414
ZNF771_chr16_30402606_30424414	0/0	a0004	317	1	0	0	1	0	0	copy fasta	ZNF771	chr16	30402606	30424414
ZNF772_chr19_57464586_57482566	0/1	a0001	449	145	24	21	81	3	15	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	1/0	a0002	448	140	46	17	58	5	13	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	a0003	448	101	24	32	29	4	12	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	a0004	448	4	0	0	4	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	a0005	449	1	0	0	1	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	a0006	449	1	0	0	1	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	a0007	40	1	1	0	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF772_chr19_57464586_57482566	0/0	a0008	448	1	1	0	0	0	0	copy fasta	ZNF772	chr19	57464586	57482566
ZNF773_chr19_57494938_57513229	1/1	a0001	442	331	61	57	155	14	42	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	a0002	442	76	34	10	28	2	2	copy fasta	ZNF773	chr19	57494938	57513229
ZNF773_chr19_57494938_57513229	0/0	a0003	442	3	3	0	0	0	0	copy fasta	ZNF773	chr19	57494938	57513229