JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
C18orf54_chr18_54352906_54387034	0/0	a0007	533	1	0	0	1	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	a0008	533	1	0	0	1	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	a0009	533	1	1	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf54_chr18_54352906_54387034	0/0	a0010	533	1	1	0	0	0	0	copy fasta	C18orf54	chr18	54352906	54387034
C18orf63_chr18_74310839_74364189	0/1	a0001	685	276	52	54	127	11	31	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0002	685	37	6	3	28	0	0	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0003	685	18	17	1	0	0	0	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0004	685	18	1	11	1	1	4	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0005	685	11	0	0	11	0	0	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0006	685	2	0	2	0	0	0	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0007	685	1	0	0	1	0	0	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0008	464	1	0	0	1	0	0	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0009	685	1	0	0	0	0	1	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	1/0	a0010	685	1	0	0	0	0	0	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0011	685	1	1	0	0	0	0	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0012	685	1	0	1	0	0	0	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0013	685	1	0	0	1	0	0	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0014	685	1	0	0	1	0	0	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0015	685	1	0	0	1	0	0	copy fasta	C18orf63	chr18	74310839	74364189
C18orf63_chr18_74310839_74364189	0/0	a0016	685	1	1	0	0	0	0	copy fasta	C18orf63	chr18	74310839	74364189
C19orf12_chr19_29693937_29720261	1/1	a0001	141	399	98	77	168	10	44	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	a0002	141	19	0	1	18	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf18_chr19_57953437_57979534	1/1	a0001	215	403	91	74	179	16	41	copy fasta	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	a0002	215	3	3	0	0	0	0	copy fasta	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	a0003	215	1	0	0	0	0	1	copy fasta	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	a0004	215	1	0	0	1	0	0	copy fasta	C19orf18	chr19	57953437	57979534
C19orf25_chr19_1468201_1484215	1/1	a0001	118	402	96	82	158	14	50	copy fasta	C19orf25	chr19	1468201	1484215
C19orf33_chr19_38299251_38310006	1/1	a0001	106	241	70	42	95	14	18	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	a0002	111	80	5	9	62	1	3	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	a0003	105	73	4	22	31	1	15	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	a0004	105	6	2	3	0	0	1	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	a0005	104	4	4	0	0	0	0	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	a0006	106	1	1	0	0	0	0	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	a0007	106	1	0	0	0	0	1	copy fasta	C19orf33	chr19	38299251	38310006
C19orf38_chr19_10843415_10874790	1/1	a0001	230	358	80	59	168	8	41	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	a0002	230	12	0	11	0	0	1	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	a0003	230	11	0	3	8	0	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	a0004	230	1	0	1	0	0	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	a0005	230	1	1	0	0	0	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	a0006	230	1	1	0	0	0	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf44_chr19_16491394_16526352	1/1	a0001	657	324	85	73	116	12	36	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	a0002	657	5	5	0	0	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	a0003	657	1	0	1	0	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf47_chr19_40314536_40353397	1/1	a0001	385	376	95	67	166	16	30	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	a0002	385	2	0	0	0	0	2	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	a0003	385	1	0	0	0	0	1	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	a0004	385	1	0	1	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	a0005	385	1	1	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	a0006	385	1	1	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	a0007	385	1	1	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397