Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF778_chr16_89212703_89242141	0/0	a0010	757	3	0	0	3	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0011	757	2	0	0	0	0	2	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0012	757	2	2	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0013	757	1	0	0	1	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0014	757	1	0	0	1	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0015	757	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0016	757	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0017	757	1	0	0	1	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0018	757	1	0	1	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0019	757	1	0	1	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0020	757	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0021	757	1	0	0	0	0	1	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0022	757	1	0	1	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0023	757	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF778_chr16_89212703_89242141	0/0	a0024	757	1	1	0	0	0	0	copy fasta	ZNF778	chr16	89212703	89242141
ZNF77_chr19_2928218_2949971	1/0	a0001	545	303	62	55	128	14	43	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0002	545	106	10	16	71	2	7	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0003	545	8	8	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0004	99	5	0	4	0	1	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0005	545	5	5	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0006	545	3	3	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0007	545	2	0	2	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0008	545	2	0	0	2	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0009	545	2	2	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0010	545	2	2	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0011	491	1	1	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0012	185	1	0	0	1	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0013	545	1	1	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0014	283	1	0	0	1	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0015	545	1	0	0	0	1	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0016	545	1	0	1	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0017	545	1	1	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0018	545	1	0	0	1	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	a0019	545	1	1	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/1	a0020	99	1	0	0	0	0	0	copy fasta	ZNF77	chr19	2928218	2949971
ZNF780A_chr19_40068045_40095943	1/1	a0001	641	278	80	45	116	9	26	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	a0002	641	22	0	0	22	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	a0003	641	7	7	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	a0004	641	4	4	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	a0005	641	1	0	0	1	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	a0006	641	1	1	0	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	a0007	641	1	0	0	0	1	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	a0008	641	1	0	0	1	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	a0009	641	1	0	1	0	0	0	copy fasta	ZNF780A	chr19	40068045	40095943
ZNF780B_chr19_40023260_40061231	1/1	a0001	833	250	77	38	114	3	16	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	a0002	833	19	0	4	11	0	4	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	a0003	833	10	7	0	1	1	1	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	a0004	833	3	3	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	a0005	833	2	2	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	a0006	833	1	0	0	1	0	0	copy fasta	ZNF780B	chr19	40023260	40061231