Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF780B_chr19_40023260_40061231	0/0	a0007	833	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	a0008	833	1	0	0	0	0	1	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	a0009	833	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	a0010	833	1	1	0	0	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF780B_chr19_40023260_40061231	0/0	a0011	833	1	0	0	1	0	0	copy fasta	ZNF780B	chr19	40023260	40061231
ZNF782_chr9_96811269_96859514	1/0	a0001	699	161	25	36	64	11	24	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	a0002	699	88	32	4	47	0	5	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	a0003	699	21	0	0	19	0	2	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	a0004	699	13	12	1	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/1	a0005	699	8	0	5	0	1	1	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	a0006	699	7	7	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	a0007	699	4	4	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	a0008	699	2	1	1	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	a0009	699	2	2	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	a0010	699	2	2	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	a0011	699	2	2	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	a0012	699	1	1	0	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	a0013	699	1	0	1	0	0	0	copy fasta	ZNF782	chr9	96811269	96859514
ZNF783_chr7_149257196_149289988	1/1	a0001	546	378	73	74	173	16	40	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	a0002	546	14	11	3	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	a0003	546	6	0	0	6	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	a0004	546	3	3	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	a0005	546	2	2	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	a0006	546	2	2	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	a0007	546	1	0	1	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	a0008	407	1	0	0	1	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	a0009	546	1	0	0	1	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	a0010	546	1	0	0	1	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	a0011	546	1	1	0	0	0	0	copy fasta	ZNF783	chr7	149257196	149289988
ZNF784_chr19_55615741_55629566	1/1	a0001	323	383	97	81	148	14	41	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	a0002	323	3	0	2	0	0	1	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	a0003	323	1	0	1	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF784_chr19_55615741_55629566	0/0	a0004	323	1	1	0	0	0	0	copy fasta	ZNF784	chr19	55615741	55629566
ZNF785_chr16_30575656_30590697	1/1	a0001	405	308	89	62	109	12	34	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	a0002	405	4	4	0	0	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	a0003	405	3	0	0	3	0	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF785_chr16_30575656_30590697	0/0	a0004	405	3	1	0	0	2	0	copy fasta	ZNF785	chr16	30575656	30590697
ZNF786_chr7_149064641_149095718	1/1	a0001	782	272	93	52	91	13	21	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	a0002	782	1	1	0	0	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	a0003	782	1	1	0	0	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	a0004	428	1	0	0	0	0	1	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	a0005	782	1	1	0	0	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	a0006	782	1	0	0	1	0	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	a0007	782	1	0	0	0	0	1	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	a0008	782	1	0	0	0	0	1	copy fasta	ZNF786	chr7	149064641	149095718
ZNF786_chr7_149064641_149095718	0/0	a0009	8	1	0	0	0	1	0	copy fasta	ZNF786	chr7	149064641	149095718
ZNF787_chr19_56082366_56126295	0/0	a0000	0	29	8	5	13	1	2	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/1	a0001	382	240	26	46	116	11	40	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	1/0	a0002	382	72	55	6	6	2	2	copy fasta	ZNF787	chr19	56082366	56126295
ZNF787_chr19_56082366_56126295	0/0	a0003	383	58	0	19	39	0	0	copy fasta	ZNF787	chr19	56082366	56126295