Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF799_chr19_12385016_12406271	0/0	a0012	643	1	0	0	1	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0013	643	1	0	1	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0014	296	1	0	0	1	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0015	643	1	0	1	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0016	610	1	1	0	0	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0017	643	1	0	0	1	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF799_chr19_12385016_12406271	0/0	a0018	643	1	0	0	1	0	0	copy fasta	ZNF799	chr19	12385016	12406271
ZNF79_chr9_127419382_127450372	0/1	a0001	498	192	48	35	81	6	21	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	1/0	a0002	498	173	32	25	87	9	19	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	a0003	498	2	2	0	0	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	a0004	498	1	0	0	1	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	a0005	498	1	0	0	1	0	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF79_chr9_127419382_127450372	0/0	a0006	498	1	0	0	0	1	0	copy fasta	ZNF79	chr9	127419382	127450372
ZNF7_chr8_144822560_144848772	0/1	a0001	686	245	63	38	113	7	23	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	1/0	a0002	686	187	28	44	84	10	20	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	a0003	686	3	0	2	0	1	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	a0004	686	1	0	0	1	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	a0005	686	1	1	0	0	0	0	copy fasta	ZNF7	chr8	144822560	144848772
ZNF7_chr8_144822560_144848772	0/0	a0006	686	1	0	0	0	0	1	copy fasta	ZNF7	chr8	144822560	144848772
ZNF800_chr7_127365043_127397708	1/1	a0001	665	355	91	74	134	14	40	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	a0002	665	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	a0003	665	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF800_chr7_127365043_127397708	0/0	a0004	665	1	1	0	0	0	0	copy fasta	ZNF800	chr7	127365043	127397708
ZNF804A_chr2_184593529_184944492	0/0	a0001	1209	62	27	19	8	1	7	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0002	1210	53	4	23	12	7	7	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0003	1209	30	28	2	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0004	1209	12	4	4	2	0	2	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0005	1210	11	0	4	3	1	3	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0006	1209	11	1	2	4	0	4	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0007	1209	10	10	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0008	1209	5	0	4	0	1	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0009	1208	2	2	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0010	1209	1	1	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0011	1209	1	1	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0012	1209	1	1	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0013	1210	1	0	0	0	0	1	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0014	1209	1	1	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0015	1209	1	0	0	1	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0016	1209	1	1	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804A_chr2_184593529_184944492	0/0	a0017	1209	1	1	0	0	0	0	copy fasta	ZNF804A	chr2	184593529	184944492
ZNF804B_chr7_88754700_89343528	0/0	a0001	1349	58	14	18	17	2	7	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0002	1349	39	33	1	5	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0003	1349	25	0	2	19	0	4	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0004	1349	7	0	1	6	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0005	1349	7	5	1	0	0	1	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0006	1349	7	6	1	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0007	1349	4	4	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0008	1349	2	0	2	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0009	1349	2	2	0	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528
ZNF804B_chr7_88754700_89343528	0/0	a0010	1349	2	1	1	0	0	0	copy fasta	ZNF804B	chr7	88754700	89343528