Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF81_chrX_47831902_47930627	0/0	a0002	661	13	10	3	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	a0003	661	4	3	1	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	a0004	661	1	0	0	0	1	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	a0005	661	1	0	0	1	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF81_chrX_47831902_47930627	0/0	a0006	661	1	0	1	0	0	0	copy fasta	ZNF81	chrX	47831902	47930627
ZNF821_chr16_71854685_71889182	1/1	a0001	412	376	82	78	156	10	48	copy fasta	ZNF821	chr16	71854685	71889182
ZNF823_chr19_11716265_11743946	1/1	a0001	610	416	87	82	187	15	43	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	a0002	610	3	0	2	1	0	0	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	a0003	610	2	0	0	0	1	1	copy fasta	ZNF823	chr19	11716265	11743946
ZNF823_chr19_11716265_11743946	0/0	a0004	610	1	1	0	0	0	0	copy fasta	ZNF823	chr19	11716265	11743946
ZNF827_chr4_145752627_145943823	1/1	a0001	1081	251	84	43	84	13	25	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	a0002	1081	1	0	0	0	0	1	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	a0003	1081	1	0	1	0	0	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	a0004	1077	1	0	0	0	1	0	copy fasta	ZNF827	chr4	145752627	145943823
ZNF829_chr19_36883124_36921291	1/1	a0001	432	340	88	74	129	14	33	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	a0002	432	7	0	0	7	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	a0003	432	2	2	0	0	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	a0004	432	1	0	0	0	0	1	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	a0005	432	1	0	0	1	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	a0006	432	1	0	0	1	0	0	copy fasta	ZNF829	chr19	36883124	36921291
ZNF830_chr17_34956540_34968777	0/1	a0001	372	306	62	62	132	15	34	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	a0002	372	76	4	5	61	2	4	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	1/0	a0003	372	65	28	3	26	1	6	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	a0004	368	2	2	0	0	0	0	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	a0005	372	1	0	1	0	0	0	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	a0006	372	1	0	0	1	0	0	copy fasta	ZNF830	chr17	34956540	34968777
ZNF830_chr17_34956540_34968777	0/0	a0007	372	1	0	1	0	0	0	copy fasta	ZNF830	chr17	34956540	34968777
ZNF831_chr20_59158821_59264113	0/1	a0001	1677	100	10	13	49	7	20	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	1/0	a0002	1677	66	33	17	5	3	7	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0003	1677	43	0	14	20	3	6	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0004	1677	28	7	2	17	0	2	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0005	1677	18	12	3	3	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0006	1677	14	3	5	2	3	1	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0007	1677	10	9	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0008	1677	3	3	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0009	1677	3	0	0	3	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0010	1677	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0011	1677	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0012	1677	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0013	1677	2	0	2	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0014	1677	2	2	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0015	1677	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0016	1677	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0017	1677	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0018	957	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0019	1677	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0020	1677	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0021	1677	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0022	1677	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0023	1677	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113