Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF831_chr20_59158821_59264113	0/0	a0024	1677	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0025	1677	1	0	0	1	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0026	1677	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0027	1677	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0028	1677	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0029	1677	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0030	1677	1	0	1	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF831_chr20_59158821_59264113	0/0	a0031	1677	1	1	0	0	0	0	copy fasta	ZNF831	chr20	59158821	59264113
ZNF835_chr19_56656980_56676757	1/0	a0001	537	200	54	46	72	8	19	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/1	a0002	537	160	23	28	89	6	13	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	a0003	537	59	7	9	29	4	10	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	a0004	537	15	0	3	12	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	a0005	537	5	5	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	a0006	537	4	4	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	a0007	537	2	2	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	a0008	537	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	a0009	537	1	0	0	1	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	a0010	253	1	0	0	1	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	a0011	537	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	a0012	537	1	1	0	0	0	0	copy fasta	ZNF835	chr19	56656980	56676757
ZNF836_chr19_52149107_52176621	0/0	a0001	936	215	39	53	89	10	24	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	a0002	936	145	42	15	77	2	9	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	a0003	936	98	18	18	47	1	14	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	a0004	936	4	1	1	0	2	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	a0005	642	2	0	0	0	2	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	a0006	936	2	0	1	0	1	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	a0007	936	1	0	0	1	0	0	copy fasta	ZNF836	chr19	52149107	52176621
ZNF836_chr19_52149107_52176621	0/0	a0008	936	1	0	0	0	0	1	copy fasta	ZNF836	chr19	52149107	52176621
ZNF837_chr19_58362623_58386030	0/1	a0001	531	259	57	57	97	12	35	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	a0002	531	87	8	11	63	3	2	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	1/0	a0003	531	53	16	11	18	3	4	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	a0004	531	4	3	1	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	a0005	531	3	3	0	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	a0006	531	1	0	1	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	a0007	531	1	0	0	0	0	1	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	a0008	531	1	1	0	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	a0009	531	1	0	1	0	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	a0010	531	1	0	0	1	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF837_chr19_58362623_58386030	0/0	a0011	531	1	0	0	1	0	0	copy fasta	ZNF837	chr19	58362623	58386030
ZNF839_chr14_102314746_102347367	1/1	a0001	927	202	15	46	99	13	27	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0002	927	96	10	22	55	0	9	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0003	927	59	25	10	13	3	8	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0004	927	18	17	1	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0005	927	9	7	0	0	2	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0006	927	5	5	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0007	927	2	2	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0008	927	2	2	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0009	927	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0010	920	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367
ZNF839_chr14_102314746_102347367	0/0	a0011	927	1	1	0	0	0	0	copy fasta	ZNF839	chr14	102314746	102347367