Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ZNF844_chr19_12059731_12086565	0/0	a0000	0	4	4	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	1/1	a0001	666	190	21	53	71	12	31	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0002	666	55	24	6	18	0	7	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0003	666	44	32	3	8	0	1	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0004	666	18	0	0	18	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0005	666	13	13	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0006	666	12	0	0	12	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0007	666	10	0	8	0	2	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0008	347	5	0	3	0	0	2	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0009	666	2	2	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0010	666	2	2	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0011	666	1	0	1	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0012	666	1	0	0	0	0	1	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0013	666	1	0	0	1	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0014	666	1	0	0	1	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0015	666	1	1	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0016	666	1	0	0	1	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	a0017	666	1	1	0	0	0	0	copy fasta	ZNF844	chr19	12059731	12086565
ZNF845_chr19_53328749_53361906	0/0	a0000	0	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0001	970	187	21	26	118	7	15	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	1/0	a0002	970	186	50	28	91	3	13	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/1	a0003	970	78	4	33	14	6	20	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0004	970	8	7	1	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0005	970	5	5	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0006	970	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0007	970	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0008	970	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0009	970	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0010	970	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0011	970	1	0	0	0	0	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0012	970	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0013	970	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0014	970	1	1	0	0	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0015	970	1	0	0	0	0	1	copy fasta	ZNF845	chr19	53328749	53361906
ZNF845_chr19_53328749_53361906	0/0	a0016	970	1	0	0	1	0	0	copy fasta	ZNF845	chr19	53328749	53361906
ZNF846_chr19_9750357_9773738	0/0	a0000	0	7	6	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	1/1	a0001	533	252	36	46	119	13	36	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	a0002	533	91	40	28	12	3	8	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	a0003	533	9	8	1	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	a0004	533	5	5	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	a0005	533	2	0	0	2	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	a0006	533	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	a0007	533	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	a0008	533	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	a0009	533	1	0	0	1	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	a0010	533	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF846_chr19_9750357_9773738	0/0	a0011	533	1	1	0	0	0	0	copy fasta	ZNF846	chr19	9750357	9773738
ZNF84_chr12_133032509_133068299	1/1	a0001	738	310	91	62	98	18	39	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	a0002	738	6	0	6	0	0	0	copy fasta	ZNF84	chr12	133032509	133068299
ZNF84_chr12_133032509_133068299	0/0	a0003	738	1	0	0	0	0	1	copy fasta	ZNF84	chr12	133032509	133068299